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Detailed information on CNT3075800


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 2e-158

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30540596Brassica junceaBrassica napus10079.0797.79680forward
CNT30235198Brassica junceaBrassica oleracea96.1859.5693.73654forward
CNT30312527Brassica junceaCamelina sativa99.7180.3388.64678forward
CNT30262430Brassica junceaBrassica rapa95.4480.2296.61649forward

Expression of CNT3075800

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MRRCWSGGMPSLSWILAFTLSIVSELSTSNVMVLPVRVFTNICIPPRRRKTKWRVDSF*

>peptide 2 (30 aa)
GDGGPSEAWTPSGCCSRLRCDHPRAAFQRR*

>peptide 3 (53 aa)
MPSLSCILALTLSMVSELSTSSVIVLPVNVLTKICIPPRSLSTKWRVDSFWML*

Sequence

>CNT3075800
ACGGAGACGGAGGACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCTAAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGC
TGCTGATCCGGAGGGATGCCTTCCTTGTCTTGTATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGCTCTCCACCTCAAGCGTGATCGTCTTGCCGGTCA
ATGTCTTAACGAAAATCTGCATACCACCACGAAGCCTGAGCACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCCGCCAAAGTACGACCATCCTC
GAGCTGTTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCTTGGATCTTAGCCTTCACGTTATCAATAGTGTCCGAACTCTCA
ACCTCCAATGTGATGGTCTTGCCGGTAAGAGTCTTCACAAATATCTGCATACCTCCACGTAGACGCAAGACCAAGTGGAGAGTCGACTCTTTCTGAATGT
TGTAGTCAGCTAGAGTCCTTCCATCCTCCAACTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGAATCTTGGCTTT
AACGTTGTCGATGGTGTCAGAGCTTTCCACCTCAAGGGTGATGGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCATCT