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Detailed information on CNT3075764


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LK91|PDP6_ARATH, E-value = 2e-32

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30538055Brassica junceaBrassica napus19.6575.8895.35258forward
CNT30262255Brassica junceaBrassica rapa69.9967.9299.67919forward

Expression of CNT3075764

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MPVCYYFHRYIQLKYPSSENRKGVMEMEWLKKKLEESFA*

>peptide 2 (41 aa)
MGDSSSPFIFVLFLSMLYLYLYFCISSDSTNKKRRLCLSRN*

Sequence

>CNT3075764
AAATGCAAAGTGACGTTTCTTATTTAGGGGCTACAAGAGACGTATTCTGAGCCACGTGTTGCTCTCTGGGCTTTCATCTCTTTGAGAAGAGAGAGAGAGT
TGAAGCGATATCATCCATGGTGGAAGGGAAGCAGAGCTTCAGGCAGATTAACGAGATCGGTTAGCACCTTTTCATCGATTAAGTTCCCTCGATCTCTCGA
GCTACGATCGGTTTGATTTGATCCGTCATTGTTGAAACCATGGGTAATTGTTGCGGGCCGGCGAGATCGTCACGGTTTTTCTCTTTGTTTATCTCCAGAT
TGGTCTATAGATGTTCTATGTCTTAGTTTAAGCTCGTGTGCTGCTCCTTCTTCCTCGTCCCTTGCCGTAAAACCCTTCAAAGCTCGCTAATGGGCTCCAG
AGGACACACTAAATTCTGAGCGTTATGAGCGGTATGAGTTACTGGAGCCAATTACCAAAGAAACGTTTCAGATGAAGATAAGCAGCTTGAAGTGAAGAAG
GAAGTAGTAGTTGATGTGAAGCAATATTCAGGTGTTGAGCTAATTATCAAGTCTGGTTTTGGTTCTACTCTGCCTTCAAAATATGATTTGATTAGAACAT
ATGAAAAATTTGGAGCTTTGGACAAAGAGAGAAGCTGTACGTTCGAGAATGACTCTTGTGCTCGCGTTAGCTTCTTGAATGTATCTGAAGGAGAAGGAGC
CTTTTACGAGTCACTAGAGAAATGCCCGTTTGCTACTACTTCCACCGTTACATTCAGCTCAAGTATCCTTCTTCTGAGAACAGAAAGGGGGTGATGGAAA
TGGAGTGGTTGAAAAAGAAGCTTGAAGAGAGCTTTGCTTGATGAATCAGAGGGAGGAGAGGTTAAGGAAAAGTTGAAGATGAGACTTGAGGAAGAATCAA
GAAACTTGCTAGACAAGGTGTATGATAATCAATAAGTAACTCATAGACGAGAACACCATTACTGGTAATTTTATGGGGGATTCTTCTTCTCCGTTTATTT
TTGTTCTCTTCCTCTCTATGTTGTATCTCTATCTATATTTTTGCATCAGTAGTGATTCAACTAACAAAAAGAGACGACTCTGTTTATCTAGAAACTGATC
ATCCCTTTTGAAAAAGGTAATTCTTTTTTTTTATAAAGTTACATCACTTATCAAGAATATAATATAAGATGTGTATGCTAATCAAGTGTAATTTATTTAT
TGTGCGTGATCCTCTTCGGTACGTCTGAGAGCCAAAGATAATCTCAAAGCTTTTTTAAAACTTTGAAACTCATTGACGTTGTCCTATCAATTATATAATT
TGTTATCTTTTGG