Detailed information on CNT3075702


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30531005Brassica junceaEucalyptus grandis94.3345.996.261629forward
CNT30519432Brassica junceaJuglans regia94.997.5695.551639forward
CNT30422894Brassica junceaPapaver somniferum95.0274.7395.81641forward

Expression of CNT3075702

Peptides detected in this lncRNA

>peptide 1 (66 aa)
VSGQKMTVKSLSVPTFLAFAGIRLGLAVIYECYLVDPASSHMLVSKIKPCMCKYERIQTVKLRMAH*

>peptide 2 (52 aa)
MINRDSRGHSYFIVRGEILGFMKDEQLRKHLPRMFSLIKNESWGLEDDQIPS*

>peptide 3 (36 aa)
MITRLIAWPLCWRRIIQISALSTFDGRIVAYHGGNG*

>peptide 4 (33 aa)
MPTRDQRMLLLGLRWHLMRNQSFWVPGGVWSQG*

>peptide 5 (47 aa)
MGGGAWPFLVGGAICLVNSVNERDLSLLTSYVEASLHGRLLRGTMAV*

>peptide 6 (44 aa)
MHLLDKRSTRALPVALMIHDNSTDRMAFVLATHHSNFCPINFRW*

>peptide 7 (33 aa)
MPLDVLGRTRATLMYSTSSHLGRQARVIFEISS*

>peptide 8 (30 aa)
MNATWLILPVVICLSQRLSHACVSMNEFRL*

>peptide 9 (29 aa)
LRTKDDGQVLVCSHFPCVCGNTTRSCRDL*

Sequence

>CNT3075702
GTCTCCGGACAAAAGATGACGGTCAAGTCCTTGTCTGTTCCCACTTTCCTTGCGTTTGCGGGAATACGACTAGGTCTTGCCGTGATTTATGAATGCTACC
TGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTATGAACGAATTCAGACTGTGAAACTGCGAATGGCTCATTA
AATCAGTTATAGTTTGTTTGATGGTAACTACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTCTGGAAGGGATGCAT
TTATTAGATAAAAGGTCGACGCGGGCTCTGCCCGTTGCTCTGATGATTCATGATAACTCGACTGATCGCATGGCCTTTGTGCTGGCGACGCATCATTCAA
ATTTCTGCCCTATCAACTTTCGATGGTAGGATAGTGGCCTACCATGGTGGTAACGGGTGACGGAGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAA
ACGGCTACCACATCCAAGGAAGGCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAACCTTGG
GATGGGTCGCCCGGTCCGCCTTCGGCGAGCACCGGTCGGCTTGTCCCTTCTGTCGGTGATGCGCTCCTGGTCTTAACTGGCCGGGTCGTTCCTCCGTCGC
TGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCATGGGATAACATCATAGGATTTCGATCCTATTGTGTTGGCCTT
CGGGATCGGAGTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAG
CATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGG
ATCAGCGGATGTTGCTTTTAGGACTCCGCTGGCACCTTATGAGAAATCAAAGTTTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGA
ATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGGAAACTTACCAGGTCCAGACATAGTAAGGATTGACAGACTGA
GAGCTCTTTCTTGATTCTATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGC
TAACTAGCTACGTGGAGGCATCCCTTCACGGCCGGCTTCTTAGAGGGACTATGGCCGTTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC
CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTTCACACCTTGGCCGACAGGCCCGGGTAATCTTTGAAATTTCATCGTGATGG
GGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTACACACCGCC
CGTCGCTCCTACCGATTGAATGATCCGGTGAAGTGTTCGGATCGCGGCGACGTGGGTGGTTCGCCGTCTGCGACGTCGCGAGAAGTCCACTAAACCTTAT
CATTTAGAGGAAGGAGAAGTCGTAACA