Detailed information on CNT3075659


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675691Brassica junceaSetaria viridis33.2424.2983.33120forward
CNT30531529Brassica junceaEucalyptus grandis30.4731.2584.55110forward
CNT30401917Brassica junceaBeta vulgaris50.1443.6182.87181forward
CNT30194604Brassica junceaPisum sativum24.6523.9287.6489forward
CNT30709031Brassica junceaGlycine max41.2714.3382.55149forward
CNT30145478Brassica junceaMedicago truncatula40.1734.0482.07145forward
CNT30441068Brassica junceaAegilops tauschii44.632.5980.12161forward
CNT30262753Brassica junceaBrassica rapa96.1240.0299.71347forward
CNT30219136Brassica junceaKalanchoe fedtschenkoi20.512.4687.8474forward

Expression of CNT3075659

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MNTAEDLELAPISFMVSKYCVTSTMSMTSLAVVPGTFTEKPKTLSRSPSTMARCQQ

>peptide 2 (80 aa)
MISPSNSRLVCERALKEAISDLSSHITNRSWSVGNEHSRGFGTGTNLLHGVKVLRNEHHVHDIFSSCPGNIHREAQDTVA*

Sequence

>CNT3075659
GAAAAATAAAAGAACCTAAAAGCATGAGAGTTTCTCAGCACAAGATCATATGATCTCAACACACAGCAAGCTTAGTAGATAACATATAATGATCAGTCCA
TCTAATTCAAGACTGGTCTGCGAACGAGCCTTGAAGGAGGCCATCTCTGATCTGAGTAGCCACATCACGAACCGCTCCTGGTCCGTGGGGAATGAACACA
GCAGAGGATTTGGAACTGGCACCAATCTCCTTCATGGTGTCAAAGTACTGCGTAACGAGCACCATGTCCATGACATCTTTAGCAGTTGTCCCGGGAACAT
TCACAGAGAAGCCCAAGACACTGTCGCGTAGCCCGTCAACGATGGCTCGATGTCAACAATG