Detailed information on CNT3075602


BLAST search results

BLAST vs Swiss-Prot:
sp|Q944G9|ALFP2_ARATH, E-value = 2e-55

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30273043Brassica junceaChenopodium quinoa20.123.8983.5197forward
CNT30538163Brassica junceaBrassica napus91.2989.2594.77440forward
CNT3068263Brassica junceaLeersia perrieri22.6114.3281.65109forward

Expression of CNT3075602

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MFSGKCSEEHVRRRRTRATGLVPGSSRSGGYLQT*

Sequence

>CNT3075602
TAAGTGATTTGACATGATAATAACAACCATACTCGAAAACAAATGTAATTAAAACACTTGCTTCATCTCCTTTCACAGCATCTTCACCTCTTCAACATTG
TTGTCTTCAGTAGGTGTAGCCTTTGACGAACATACCCTCCTTAGCCTCTTCAGACTCACCTTCTCCGGTGTATTTTCCGAGCTGAGCCAACGAATTGGCC
TTGGCTCGAGTCAAGAGAGTGGTCTGAGCTGCGTTCACGTTCTCAGCTCTGCCTCCCCATGTTTTCAGGCAAGTGTTCTGAAGAGCACGTGCGTAGGAGA
AGGACACGTGCCACGGGTTTGGTGCCTGGTTCATCGCGTTCAGGAGGATACCTTCAAACATGACATTGTTCTGAGCAAGGTAAAAGAAAACCTCAGCCCA
CACCTTCTCAGCTACTTCGTAAGTCCTGTCAATGTCGTGTTCTCCGTCCAACAATATCTCTGGCTCCACTATGGGAACCAAT