Detailed information on CNT3075495


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8W4H7|EF1A2_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30380230Brassica junceaManihot esculenta76.9936.2784.43880forward
CNT30503993Brassica junceaNicotiana attenuata20.3884.7389.7233forward
CNT30173274Brassica junceaTrifolium pratense72.1861.3486.18825forward
CNT30146334Brassica junceaMedicago truncatula56.5264.9984.52646forward
CNT30647369Brassica junceaRosa chinensis36.2245.785.27414forward

Expression of CNT3075495

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MMITCEVKLAAPLAGSSLELEATYPRLRSLTATFLTLNPTLSPGSASTRDS*

>peptide 2 (68 aa)
EMISCHIHNNITSKIVHNPVAKVKQKNSKARLQHSSATSDQEPNYENMVLTDKRRSYNTNKRPNTTLM*

>peptide 3 (54 aa)
MMHLNRLNLSGQTRRSKSHNHTRLEHTGLNTSYRHRSNTTNLVHILEWKTERLV*

>peptide 4 (81 aa)
MTPTATVCLMSLTAKRPSGGYSEKVSTTIGLVGVILTIPASPFFKNLGSFSISLPERLSILVKISENLTAMWDVWQSRTGA*

Sequence

>CNT3075495
GAAATGATCTCATGCCATATTCATAATAACATAACATCCAAAATAGTTCATAACCCGGTAGCAAAAGTAAAACAAAAAAACAGTAAAGCTAGACTTCAAC
ATAGCTCCGCCACCTCCGATCAAGAACCCAATTACGAGAACATGGTTCTGACGGACAAGAGACGAAGCTATAACACAAACAAACGACCAAACACCACACT
AATGTAAAAAAACTAAAATCGTCTTCGGATGAAAGACTCTTGCTGAAGGTGCTTTACTTGGCACCCTTCTTGACGGCAGCCTTGGTCACCTTGGCTCCGG
TCGGGTCCTTCTTGTCAACGCTCTTGATGACACCAACTGCAACAGTCTGCCTCATGTCCCTAACAGCGAAACGTCCAAGCGGCGGGTACTCAGAGAAAGT
CTCAACAACCATTGGCTTGGTGGGAGTCATCTTAACCATACCAGCATCACCATTCTTCAAAAACTTGGGCTCCTTCTCAATCTCCTTACCAGAACGCCTA
TCAATCTTGGTCAAAATCTCAGAGAACTTGACAGCAATGTGGGACGTGTGGCAATCAAGAACCGGAGCGTAACCGTTACCAATCTGACCAGGGTGGTTCA
TGATGATAACCTGTGAGGTGAAGTTAGCAGCACCTTTAGCAGGATCATCCTTGGAGTTGGAAGCAACGTACCCACGCTTAAGATCCTTGACAGCAACGTT
CTTAACATTGAACCCAACGTTGTCACCTGGAAGCGCCTCAACAAGAGACTCATGATGCATCTCAACAGACTTAACCTCAGTGGTCAAACCCGAAGGAGCA
AAAGTCACAACCATACCAGGCTTGAGCATACCGGTCTCAACACGTCCTACCGGCACCGTTCCAATACCACCAATCTTGTACACATCCTGGAGTGGAAGAC
GGAGAGGCTTGTCTGACGGCCTCTTTGGCTCGTTGATCTGATCAAGAGCCTCGAGAAGAGTCGGTCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCAAT
CATGTTGTCACCCTCGAAACCAGAGATGGGAACAAACGGGATTTTATCAGGGTTGTAACCAACCTTCTTCAAGTAAGAAGACACCTCCTTGATAATCTCA
TCGTACCTAGCCTTAGAGTACTTAGGAGTAGTAGCATCCATCT