Detailed information on CNT3075399


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 4e-157

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30541358Brassica junceaBrassica napus71.1167.8298.07881forward
CNT30261984Brassica junceaBrassica rapa70.5410099.89874forward
CNT30229076Brassica junceaAnanas comosus53.3551.285.48661forward

Expression of CNT3075399

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MRIDQTSSHFKEDRIIFCGYVWIVTTLNVISTPSRCKNPSTVCFQKRHS*

>peptide 2 (31 aa)
MISFQENETLKATTETQHQVKGRLLLDVVVG*

>peptide 3 (40 aa)
MVSELSTSSVIVFPVKVLTKICMPPRSLRTRCRVDSFWML*

>peptide 4 (31 aa)
MPQTHTHTNHDKFSRKRDIKSHHGDATPSEG*

>peptide 5 (52 aa)
MRRCWSGGMPSLSWILALTLSIVSELSTSSVMVLPVKVLTKICMPPRRRNTR*

>peptide 6 (60 aa)
MKSRLLLNVVVGQCTTILQLLAGKDQTLLVGRDSLLVLYLSLDVIDGVGALHLECDRLSR*

Sequence

>CNT3075399
TCCAAGTAACTTACAGCGCATTGAGTTTAAGACATGAGGATCGACCAAACTAGTTCGCATTTTAAAGAAGACAGAATTATCTTCTGTGGTTATGTCTGGA
TCGTAACCACCTTGAATGTAATAAGCACACCTTCAAGGTGCAAAAACCCCAGCACCGTATGCTTTCAGAAACGACACAGCTAGGCATTCACCCATCTACA
ACGTAACCACAAGATTCGAAACAAAACTTTCAAGAGTAAAGAAAATATATTCCAAGATAGAAACATTCGAATGGATCTTAGAACGGAAAGAGAAAGAGAG
ATCAATTATTCAAGAGGCTTTATAATGCCTCAAACACACACAAACCATGATAAGTGAGAAAGAGAGATCAATTATTTAAGAGGCTTTATAATGCCTCAAA
CACACACACACACAAACCATGATAAGTTTTCAAGAAAACGAGACATTAAAAGCCACCACGGAGACGCAACACCAAGTGAAGGGTAGACTCCTTCTGGATG
TTGTAGTCGGCTAGGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCT
TGACGTTATCAATCGTGTCCGAGCTCTCGACCTCCAGTGTGATGGTCTTACCAGTCAAGGTCTTGACAAAGATTTGCATGCCTCCACGCAGACGTAACAC
GAGATGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGCCAATGTACGACCATCCTCCAACTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCGGGCGGG
ATTCCCTCCTTGTCCTGTATCTTAGCCTTGACGTTATCGATGGTGTCGGAGCTCTCCACCTCGAGTGTGATCGTCTTTCCCGTTAAGGTCTTGACAAAGA
TCTGCATGCCACCACGGAGCCTGAGGACGAGATGTAGAGTCGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCTCCCGTCCTCGAGCTGCTTTCCGGC
GAAGATGAGCCTCTGCTGATCCGGAGGAATACCCTCCTTGTCTTGAATCTTGGCTTTAACATTGTCGATGGTGTCAGAGCTTTCCACCTCAAGGGTGATC
GTCTTTCCCGTGAGTGTCTTAACGAAGATCTGCATCTGTTAATTCACAAAAGCTTTAACATCAATACTCAAACTCAGAGCAATTGCAAAACACGAATCAC
ATACAATCAACAACTCAATCACAGATCTCCAAGAATCGA