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Detailed information on CNT3075093


BLAST search results

BLAST vs Swiss-Prot:
sp|P10795|RBS1A_ARATH, E-value = 2e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30260270Brassica junceaBrassica rapa35.6944.6691.47293forward
CNT30605275Brassica junceaGossypium raimondii11.0830.0384.6291forward
CNT30479769Brassica junceaArabidopsis halleri30.3332.6890.36249forward

Expression of CNT3075093

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MQLTLPPLLTMEVMSLLALRVTGNAEEDFKPVNGATMVA*

>peptide 2 (37 aa)
QYRNYMFIKSDILQSDIESLVNRNPKRKKETDLLEMK*

>peptide 3 (32 aa)
MNISSLLYILFNDSRYLNVLLNRILFESTSCV*

Sequence

>CNT3075093
AGCAATATAGAAATTACATGTTCATAAAATCAGACATTTTACAATCCGATATAGAAAGTCTCGTAAACAGAAATCCAAAGAGAAAAAAAGAAACAGACTT
ATTGGAAATGAAATGAGAAGATATTATTATTATATGAAAGCGAATTAAGCACCGGTGAAGCTTGGTGGCTTGTAGGCGATGAGACTGATGCACTGGACTT
GACGGTTGTTGTCGAATCCGATGATCCTGATGAAGGCGTTAGGGTACTCCGTTTTGCACTCTTGGACTTCCTTCAACACTTGAGCAGAGAATCCACTTGT
TGCGGAGAAGGTAGTCGACTTCCTTACCCAATTCAACTTCGGTAAGGTCAGGAAGGTAAGAGAGGGTCTCAAACTTCTTCTTTCCAACTGGTGGCCACAC
CTACGAAACGTATTTCCAATTAATGAATATTAGTTCACTTTTGTATATACTGTTTAACGATTCTAGGTATCTAAATGTACTTTTGAATAGGATTCTGTTC
GAATCTACCAGTTGCGTGTAATAAAAGACAAGCCTAGCTCTAGACTCTCTAGTGACATTTACCTTCATGCAGCTAACTCTTCCTCCGTTGCTAACGATGG
AGGTAATGTCGTTGTTGGCCTTGCGGGTGACTGGGAATGCAGAGGAAGACTTCAAGCCGGTGAATGGAGCGACCATGGTGGCTTGAGCCGGGGAGGTAAC
AACAGCGGCGGAGGAGAGCATAGAGTAAGCCATGACTACTTCTTTTTCCTTCTCTTAACTCTTACTGTTAGTCTATTGCTTTGGTCATCTATATAGAGTG
AGAACCCTTATGGATATTTCA