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Detailed information on CNT3075086


BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 3e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30371985Brassica junceaArabidopsis thaliana26.7734.5890.48231forward
CNT30235395Brassica junceaBrassica oleracea22.1364.7598.95191forward
CNT30613340Brassica junceaArabis alpina22.7128.290.82196forward

Expression of CNT3075086

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MNISSLLYILFNDSRYLNVLLNRILFESTSCV*

>peptide 2 (39 aa)
MQLTLPPLLTMEVMSLLALRVTGNAEEDFKPVNGATMVA*

Sequence

>CNT3075086
AATTGATAATAACCATCGGTAACCAAGAAGAAAATATGCAATATAGAGATTACATGTTCATAAATCAGACACTTGACAATCCGATATAACATGCCTCAGA
AACAAAAAGCCAAAGAAAACAGACAAATGGAAATGAAATGAGTAGATATTATTTATGAAATGTCTTACAACGCGAATTAAGCACCAGTGAAGCTTGGTGG
TTTGTAGGCGATGAAACTGATGCACTGGACTTGACGGTTGTTGTCGAATCCAATGATCCTGATGAAGGCGTTAGGGTACTCCGTTTTGCACTCTTGGACT
TCCTTCAACACTTGAGCAGAGTCGGTAGTCGACTTCCTTACCCAATTCAACTTCGGTAAGGTCAGGAAGGTAAGAGAGGGTCTCAAACTTCTTCTTTCCA
ACTGGTGGCCACACCTACGAAACGTATTTCCAATTAATGAATATTAGTTCACTTTTGTATATACTGTTTAACGATTCTAGGTATCTAAATGTACTTTTGA
ATAGGATTCTGTTCGAATCTACCAGTTGCGTGTAATAAAAGACAAGCCTAGCTCTAGACTCTCTAGTGACATTTACCTTCATGCAGCTAACTCTTCCTCC
GTTGCTAACGATGGAGGTAATGTCATTGTTGGCCTTGCGGGTGACTGGGAATGCAGAGGAAGACTTCAAGCCGGTGAATGGAGCGACCATGGTGGCTTGA
GCCGGTGAGGTAACCACAGCAGCGGAGGAAAGCATAGAGGAAGCCATTACTACTTCTTCTTCTTCTTCTTCTTCTTCTTTTCTCTTAACTTACTTGTTTG
TCTATCGCTTTGGTTATCTATATATAACGAGAACCGCAAGAGGAAAAGGCCCTAATAACCAGA