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Detailed information on CNT3075084


BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 2e-53

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378198Brassica junceaArabidopsis thaliana33.0637.0391.29287forward
CNT30616510Brassica junceaSesamum indicum20.9713.1981.32182forward
CNT30727210Brassica junceaCorchorus capsularis27.429.2882.77238forward
CNT30166270Brassica junceaPistacia vera21.4328.5781.72186forward
CNT30235546Brassica junceaBrassica oleracea70.1673.3794.75609forward
CNT30312471Brassica junceaCamelina sativa29.8434.5894.21259forward
CNT3061966Brassica junceaArabidopsis lyrata31.1134.5791.85270forward
CNT30623489Brassica junceaDaucus carota20.1626.480.57175forward
CNT30479552Brassica junceaArabidopsis halleri27.5341.6492.05239forward
CNT30620550Brassica junceaCajanus cajan21.4315.5381.18186forward
CNT30355778Brassica junceaLactuca sativa20.3922.5283.62177forward
CNT30573704Brassica junceaVitis vinifera20.9723.381.32182forward
CNT30705707Brassica junceaPrunus avium20.6215.8882.12179forward
CNT3039544Brassica junceaMarchantia polymorpha9.129.788.6179forward

Expression of CNT3075084

Peptides detected in this lncRNA

>peptide 1 (50 aa)
PNSHLKVVTTKKKQYRNYMFIKSDILQSDIESLVNRNPKRKKETDLLEMK*

>peptide 2 (39 aa)
MFRSKKTKLLFLLPPTRIQHKESTCCGEGSRLPYPIQLR*

>peptide 3 (29 aa)
MEVMSLLALRVTGNAEEDFKPVNGATMVA*

Sequence

>CNT3075084
CCTAATAGCCATCTGAAAGTAGTAACCACGAAGAAGAAGCAATATAGAAATTACATGTTCATAAAATCAGACATTTTACAATCCGATATAGAAAGTCTCG
TAAACAGAAATCCAAAGAGAAAAAAAGAAACAGACTTATTGGAAATGAAATGAGAAGATATTATTATTATATGAAAGCGAATTAAGCACCGGTGAAGCTT
GGTGGCTTGTAGGCGATGAGACTGATGCACTGGACTTGACGGTTGTTGTCGAATCCGATGATCCTGATGAAGGCGTTAGGGTACTCCGTTTTGCACTCTT
GGACTTCCTTCAACACTTGAGCAGAGTCAGTGCATCCGAACAAGGGAAGCTTCCACATTGTCCAGTAACGTCCATCGTAGTATCCGGGGGTGCTTCCGTG
CTCACGGTAAACAAACCCGTGCTACACACACGTGAGAATTCCAATCAAAATCAGGATTGAGATTATGTGATAAAAGATGTTTAGATCCAAGAAAACAAAA
CTTCTGTTTTTATTACCTCCAACTCGAATTCAACACAAGGAATCCACTTGTTGCGGAGAAGGTAGTCGACTTCCTTACCCAATTCAACTTCGGTAAGGTC
AGGAAGCTAACTCTTCCTCCGTTGCTAACGATGGAGGTAATGTCGTTGTTGGCCTTGCGGGTGACTGGGAATGCAGAGGAAGACTTCAAGCCGGTGAATG
GAGCGACCATGGTGGCTTGAGCCGGGGAGGTAACAACAGCGGCGGAGGAGAGCATAGAGTAAGCCATGACTACTTCTTTTTCCTTCTCTTAACTCTTACT
GTTAGTCTATTGCTTTGGTCATCTATATAGAGTGAGAACCCTTATGGATATTTCATGATATCGTCGTT