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Detailed information on CNT3075006


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SUI4|PSAL_ARATH, E-value = 2e-48

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533721Brassica junceaEucalyptus grandis30.4419.6382.48137forward
CNT30516978Brassica junceaJuglans regia22.4414.8183.17101forward
CNT30698134Brassica junceaQuercus lobata31.787.6781.82143forward
CNT30376279Brassica junceaArabidopsis thaliana8060.485360forward
CNT3021623Brassica junceaCitrullus lanatus27.789.283.2125forward
CNT30730016Brassica junceaCorchorus capsularis20.4413.983.792forward
CNT30629841Brassica junceaVigna unguiculata27.7821.3783.2125forward
CNT30710020Brassica junceaGlycine max34.4433.7782.58155forward
CNT3042792Brassica junceaPrunus dulcis31.7838.7583.92143forward
CNT30635301Brassica junceaCapsicum annuum22.4425.4482.18101forward
CNT3094038Brassica junceaSolanum tuberosum20.4414.7783.792forward
CNT30560479Brassica junceaActinidia chinensis30.2212.9281.62136forward
CNT3084834Brassica junceaVigna radiata21.7825.4584.6998forward
CNT30238125Brassica junceaBrassica oleracea49.7819.1187.95224forward
CNT30172489Brassica junceaTrifolium pratense21.787.686.7398forward
CNT30261201Brassica junceaBrassica rapa66.6733.78100300forward
CNT30614377Brassica junceaArabis alpina29.1150.5887.79131forward
CNT30454500Brassica junceaSaccharum spontaneum27.7834.5380.8125forward
CNT304795Brassica junceaZea mays27.1126.9981.15122forward
CNT30217087Brassica junceaKalanchoe fedtschenkoi3615.5981.48162forward
CNT30620323Brassica junceaCajanus cajan23.785.9983.18107forward
CNT30359901Brassica junceaLactuca sativa32.4421.5381.51146forward
CNT30570425Brassica junceaVitis vinifera21.785.6484.6998forward
CNT30644515Brassica junceaCannabis sativa29.1122.6683.21131forward
CNT3027985Brassica junceaTheobroma cacao30.2225.0582.35136forward
CNT3037519Brassica junceaCucumis melo21.789.4883.6798forward
CNT30112090Brassica junceaFicus carica25.115.5282.3113forward
CNT30726868Brassica junceaLupinus angustifolius23.1112.1985.58104forward
CNT3049140Brassica junceaCucumis sativus27.7839.1880.8125forward

Expression of CNT3075006

Peptides detected in this lncRNA

>peptide 1 (30 aa)
IVLYKDDPEIQDSCSDKSKKETMVQESLCR*

Sequence

>CNT3075006
CCATAGTATTATACAAAGACGACCCTGAGATTCAAGATTCTTGCTCAGACAAAAGTAAAAAAGAAACAATGGTGCAAGAGAGTCTCTGTAGATAACATAC
TGGTGAAGCTCATATTTTGAACTACATTCATTTGACGTAATAAGGAAGGTCAAGAACGTAGAGGAGAAAGTAAGCCCAAGTCACACCAGAGATCCCTCCG
AAGAAGAACCCTCCCGTGAATTTTGCCCATCCCTCAGCTGTCTGAAGCTGATCGGGCTGCTTCTTCCGCCCAGTCAACGTCAAACTCGGAGCAATCGAAG
AGATTCCGTAGATAGTGAGGCACATGCTGAGGATGACTACAAGCCCAGCGGCGGCTAAGGAGCCGGCAGAACCAGCGTAAGCAGTGTTCCTTAATGGGCC
AGCTTTGACGAATGGGCCCACTAAGAGGAAACCATGTGCCAAGCCCACTT