CANTATAdb - search

Detailed information on CNT3074928

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30236573	Brassica juncea	Brassica oleracea	24.22	40.88	87.98	233	forward

Expression of CNT3074928

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MLFLISDLGFMSYFIFQMLFCIMDFQRGR*

>peptide 2 (55 aa)
ALKKYKNQNLQRKSERERESEKKKDRNHCMLPPGVLSGATTRQDIVKLVITINRS*

Sequence

>CNT3074928
GCACTAAAAAAATATAAAAATCAGAATTTACAGAGAAAAAGTGAGAGAGAGAGAGAGAGTGAGAAAAAGAAAGATAGGAACCATTGCATGCTGCCACCAG
GAGTCCTCTCCGGAGCCACCACACGCCAGGACATTGTCAAGCTCGTCATCACCATCAACCGCAGCTGAGAATCGCCGGAAACCGCCGCCTCTTAAGCTTT
GTTTTTGTCCGTTCAGTACATCGGCCATAACTTCCTAACTGTTGCGAATCTCGCGCATGCAGAGCCACCATCGTGTTCCTCTCGTCGAGACGAAGCCGTA
TCCACCGACCACGCCGCAATCGGAGTCCGGACGAAGCCGCTAGAACCTCCAGAAGTTTCACCTCTACGCGCGCGTGAGTTACACGCGCCGCCGCCGGAAA
TCGTCTCCGCCGTCATCCGCCGCCGGACCACCGCTTCGTCACTACCGGAACGCCGTGCTCCGCCTTCTGTTTTCATCATCGTCCGCCGTCACCGCCGATT
TGGGGTCTATTTGAGCATCTGGAGTTCATAGAGACCACTTCTTCTTGTTGCTAAGGTGAGACCAACGAGCAGGAGTGATTATCGGACCGGTGCTAGTGGG
CTTTTGGGCTTCTATTACTTTTATCGTTATCGGGCTTTTAGGCCTTTGGGCTTTTATCGTTTATGTTATTTCTTATTTCAGACCTTGGGTTTATGTCGTA
TTTTATATTTCAGATGTTATTTTGTATTATGGATTTCCAGCGTGGACGTTGACTTTCAAATATTTATAAATGGAGATATCATAGCTATATATTTATCGAA
TTATTTTTATTATTTCGAAAGTGACGGGTGTCACAAGTTTGGTATCAGAGCTATTTAATTATCATAATATTTTATTATGTAAATCGGGGTGTTACAAAAA
CTTCATTTCCAATGTGGGAGCCAGTAATTATATCTTCCTCAAGCACTCTTTTGCCTATGTGG