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Detailed information on CNT3074857


BLAST search results

BLAST vs Swiss-Prot:
sp|P27985|RBS2_BRANA, E-value = 3e-57

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30545373Brassica junceaBrassica napus56.9362.6299.74382forward
CNT30235483Brassica junceaBrassica oleracea50.9760.7597.95342forward

Expression of CNT3074857

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MFTITHLTIRYRMSEKQKTKGKRNRQLEMK*

Sequence

>CNT3074857
AATTGATAATAACCATCGGTAACCAAGAAGAAAATATGCAATATAGAGATTACATGTTCATAAATCAGACACTTGACAATCCGATATAACATGCCTCAGA
AACAAAAAGCCAAAGAAAACAGACAAATGGAAATGAAATGAGTAGATATTATTTATGAAATGTCTTACAACGCGAATTAAGCACCAGTGAAGCTTGGTGG
TTTGTAGGCGATGAAACTGATGCACTGGACTTGACGGTTAAGCAATATAGAGATTACATGTTCACAATCACACATTTGACAATCCGATATAGAATGTCTG
AGAAACAGAAAACCAAAGGGAAAAGAAACAGACAATTGGAAATGAAATGAGCAGAGATTATTATGTGAATGTCATAGCAAATTAAGCACCGGTGAAGCTT
GGTGGCTTGTAGGCGATGAAACTGATGCACTGGACTTGACGGTTGTTGTCGAATCCGATGATCCTGATGAAAGCGTTAGGGTACTCCGTTTTGCATTCTT
GGACTTCCTTCAACACTTGAGCAGAGTCAGTGCATCCGAACAAGGGAAGCTTCCACATTGTCCAGTAACGGCCATCGTAGTCGACTTCCTTACCCAATTC
AACTTCGGTAAGGTCAGGAAGGTAAGAGAGGGTCTCAAACTTCTTCTTTCCAACTGGTGGCCACACCTACA