Detailed information on CNT3074841


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697365Brassica junceaOryza sativa19.636.4785.5797forward
CNT30524209Brassica junceaSetaria italica36.169.6583.8179forward
CNT30617858Brassica junceaSesamum indicum15.3521.988.1676forward
CNT3070360Brassica junceaQuercus suber40.269.8286.93199forward
CNT30709835Brassica junceaGlycine max45.6629.2788.94226forward
CNT30179070Brassica junceaSecale cereale30.9131.1684.31153forward
CNT30558966Brassica junceaActinidia chinensis19.1926.9983.1695forward
CNT30237993Brassica junceaBrassica oleracea21.8221.9598.15108forward
CNT30612225Brassica junceaArabis alpina37.5873.5289.25186forward
CNT30650801Brassica junceaRosa chinensis42.2215.9190.91209forward
CNT30365067Brassica junceaSorghum bicolor35.9629.4784.27178forward
CNT30620724Brassica junceaCajanus cajan40.23185.43199forward
CNT30117918Brassica junceaOryza nivara29.2916.1382.76145forward

Expression of CNT3074841

Peptides detected in this lncRNA

>peptide 1 (80 aa)
HVTEQESSNLISNSSQSSVIPIPRVGTTTTDEQLRPEVHGLLLKLIVINVASGEVDLVRKASRARDWQRFSIWSMNSLPP*

>peptide 2 (37 aa)
MRSWISGSTVTRGVFPQAETGSISENMVEGERERERDL

>peptide 3 (33 aa)
MPSEYLLVSALPRASMTAKEVKFSEAMSSIPRH*

Sequence

>CNT3074841
CCATGTCACAGAGCAAGAGAGCTCCAACCTTATCAGCAACAGCTCTCAATCTAGCGTAATCCCAATCCCTAGGGTAGGCACTACCACCACAGATGAGCAA
CTTAGGCCTGAAGTCCATGGCCTTCTCCTCAAGCTTATCGTAATCAATGTAGCCAGTGGTGAAGTTGACCTTGTACGGAAGGCTTCGAGAGCGCGTGACT
GGCAGAGATTCTCGATCTGGTCGATGAACTCGTTGCCTCCGTAGTAACGGTTACCAGGCATGCCTTCGGAGTATTTGTTGGTGAGTGCGCTTCCGAGAGC
TTCGATGACGGCGAAGGAAGTGAAGTTCTCGGAGGCGATGAGTTCGATTCCGCGGCATTGACGACGCTTCTCCTTCTCGATGAGATCGTGGATCTCTGGA
TCGACGGTGACGAGAGGGGTGTTTCCCCAGGCTGAGACTGGATCCATCTCGGAGAATATGGTCGAGGGAGAGAGAGAGAGAGAGAGAGATCTGAG