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Detailed information on CNT3074679


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 7e-160

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513431Brassica junceaJuglans regia75.4770.1285.21683forward
CNT30200107Brassica junceaPisum sativum71.2772.883.57645forward
CNT30506305Brassica junceaNicotiana attenuata76.5773.4984.42693forward
CNT30613113Brassica junceaArabis alpina76.875.6386.62695forward

Expression of CNT3074679

Peptides detected in this lncRNA

>peptide 1 (33 aa)
DYIIIFQNNPIWFITEEKTRTQSEFINYSKGAL*

>peptide 2 (31 aa)
MVSELSTSRVIVFPVNVFTKICMPPRRRKTK*

Sequence

>CNT3074679
CGACTATATTATAATATTTCAGAATAATCCGATTTGGTTCATAACGGAAGAGAAAACAAGGACGCAAAGCGAGTTCATCAATTATTCAAAAGGGGCTTTA
TAAGACCCCAAAACATAAACCATAAGAAGTATTTAAAAGAAACGCAGACACTGACTTTTGAACCAACAAAGGACAAGAGTTTTAGAAACCTCCACGGAGA
CGGAGGACCAAGTGAAGAGTTGATTCTTTCTGGATGTTATAGTCAGCCAAAGTACGACCATCCTCAAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGT
CTGGAGGAATACCCTCTTTGTCCTGGATCTTGGCCTTCACGTTGTCAATGGTGTCTGAGCTCTCCACCTCTAGAGTGATCGTCTTTCCTGTTAACGTCTT
CACGAAGATCTGCATGCCTCCACGTAGACGCAAGACCAAGTGAAGAGTCGACTCTTTCTGAATATTGTAATCCGCCAAGGTGCGACCATCTTCCAACTGC
TTTCCGGCAAAGATAAGCCTCTGCTGGTCCGGTGGGATTCCCTCCTTATCCTGGATCTTGGCCTTAACATTGTCAATAGTGTCAGAGCTCTCCACCTCCA
AAGTGATAGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCATACCACCACGGAGCCTGAGGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTC
AGCCAAGGTTCTCCCGTCTTCCAACTGCTTGCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGGATTCCCTCCTTATCCTGAATCTTGGCCTTAACGTTG
TCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGATGGTCTTTCCGGTGAGAGTTTTCACGAAGATCTGCATCTGAATTTCACAAACAACAGCGATCAATA
ACCAA