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Detailed information on CNT3074551


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 7e-160

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30636043Brassica junceaCapsicum annuum76.1344.1185.34689forward
CNT30540607Brassica junceaBrassica napus77.947.7691.49705forward
CNT30235037Brassica junceaBrassica oleracea96.6936.2392.34875forward
CNT3061726Brassica junceaArabidopsis lyrata48.5169.1390.43439forward
CNT30260853Brassica junceaBrassica rapa99.67100.4597.45902forward
CNT30217467Brassica junceaKalanchoe fedtschenkoi75.1479.1685680forward
CNT30477816Brassica junceaArabidopsis halleri76.5785.7788.17693forward
CNT30114617Brassica junceaEutrema salsugineum75.0386.0687.33679forward

Expression of CNT3074551

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MRRCWSGGIPSLSWILAFTLSMVSELSTSSVMVLPVKVLTKICIPPRSLSTR*

>peptide 2 (33 aa)
DYIIIFQNNPIWFITEEKTRTQSEFINYSKGAL*

Sequence

>CNT3074551
CGACTATATTATAATATTTCAGAATAATCCGATTTGGTTCATAACGGAAGAGAAAACAAGGACGCAAAGCGAGTTCATCAATTATTCAAAAGGGGCTTTA
TAAGACCCCAAAACATAAACCATAAGAAGTATTTAAAAGAAACGCAGACACTGACTTTTGAACCAACAAAGGACAAGAGTTTTAGAAACCTCCACGGAGA
CGGAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCTGCCAAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGT
CCGGAGGAATACCTTCCTTGTCTTGGATCTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCAAGTGTGATGGTCTTGCCGGTCAAGGTCTT
AACGAAAATCTGCATACCACCACGGAGCCTGAGCACCAGGTGAAGAGTTGATTCTTTCTGGATGTTATAGTCAGCCAAAGTGCGACCATCTTCCAACTGC
TTTCCGGCAAAGATAAGCCTCTGCTGGTCCGGTGGGATTCCCTCCTTATCCTGGATCTTGGCCTTAACATTGTCAATAGTGTCAGAGCTCTCCACCTCCA
AAGTGATAGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCATACCACCACGGAGCCTGAGGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTC
AGCCAAGGTTCTCCCGTCTTCCAACTGCTTGCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGGATTCCCTCCTTATCCTGAATCTTGGCCTTAACGTTG
TCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGATGGTCTTTCCGGTGAGAGTTTTCACGAAGATCTGCATCTGAATTTCACAAACAACAGCGATCAATA
ACCAA