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Detailed information on CNT3074375


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30499788Brassica junceaCoffea canephora11.3622.2293.0672reverse complement
CNT30403020Brassica junceaBeta vulgaris11.9927.8493.4276reverse complement
CNT30611088Brassica junceaArabis alpina11.220.9491.5571forward
CNT30653503Brassica junceaRosa chinensis11.6729.2593.2474reverse complement
CNT30214655Brassica junceaHelianthus annuus11.3633.1893.0672reverse complement

Expression of CNT3074375

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MVRMQFASCLISYHSCHISYLMFCFFPETLSYLMCFLST

>peptide 2 (34 aa)
NFSAVDVTLRSKQFFLVFCRNFINLSVCIRFHIL*

Sequence

>CNT3074375
AACTTCTCGGCTGTTGATGTAACCTTAAGATCAAAGCAATTTTTCTTGGTCTTTTGCAGGAACTTTATTAATCTAAGCGTTTGCATTCGTTTTCATATCT
TGTAGCATACTCTGCTTGCATAAGGAGATTGGAATATTATCAAGATGGAGCATGAAAATCTAAATTTCTGAATCCTGAAAGCCAAGGTGTATGTGAGTAG
CTACTTTTGTAAATCTGGCACCAAAAACATAGAAATTGCGAGGTAAAGTCAATGGGGGCATTCCGTGAATCGAACTGGGATCTCTTGCACCCAAAGCCAG
AATCATACCACTAGACCAAATGCCCTGTTTTCAAACATTGAAGAGAGAATGATTTTATCTTTGGATCCATTTTTTATAATACCAGTTCCTGCTCTCTGGT
TTTATTGTGCTTGAAAGATCACCATTGCAATTGTTGGAACTGGAATCAGATCAGGATTGATTTGGTTAGAGGGAGATGTGGATTTTGCTTTAGGGAACCT
AAGGTAGTGGATCTGATGGTAAGGATGCAATTTGCATCTTGTTTAATCAGTTACCATTCATGTCATATCTCATATCTTATGTTTTGTTTTTTTCCTGAAA
CACTATCATATCTTATGTGTTTTTTGTCAACATC