CANTATAdb - search

Detailed information on CNT3074284

BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 2e-103

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30616366	Brassica juncea	Sesamum indicum	64.07	52.24	87.16	444	forward
CNT30234371	Brassica juncea	Brassica oleracea	100.29	42.27	94.53	695	forward
CNT30260671	Brassica juncea	Brassica rapa	99.13	102.38	97.09	687	forward
CNT30203004	Brassica juncea	Helianthus annuus	65.66	39.77	85.93	455	forward

Expression of CNT3074284

Peptides detected in this lncRNA

>peptide 1 (38 aa)
NIKSNDYIIIFQNNPIWFITEEKTRTQSEFINYSKGAL*

>peptide 2 (52 aa)
MRRCWSGGIPSLSWILAFTLSMVSELSTSSVMVLPVKVLTKICIPPRSLRTK*

Sequence

>CNT3074284
GAAACATAAAGAGCAACGACTATATTATAATATTTCAGAATAATCCGATTTGGTTCATAACGGAAGAGAAAACAAGGACGCAAAGCGAGTTCATCAATTA
TTCAAAAGGGGCTTTATAAGACCCCAAAACATAAACCATAAGAAGTATTTAAAAGAAACGCAGACACTGACTTTTGAACCAACAAAGGACAAGAGTTTTA
GAAACCTCCACGGAGACGGAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCTGCCAAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAG
ATGAGACGCTGCTGGTCCGGAGGAATACCTTCCTTGTCTTGGATCTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCAAGTGTGATGGTCT
TGCCGGTCAAGGTCTTGACAAAGATCTGCATACCACCACGGAGCCTGAGGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTTCT
CCCGTCTTCCAACTGCTTGCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGGATTCCCTCCTTATCCTGAATCTTGGCCTTAACGTTGTCGATGGTGTCG
GAGCTCTCCACCTCGAGGGTGATGGTCTTTCCGGTGAGAGTTTTCACGAAGATCTGCATCTGAATTTCACAAACAACAGCGATCAATAACCAA