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Detailed information on CNT3074281


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 9e-101

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513636Brassica junceaJuglans regia38.3369.4786.59455forward
CNT30541492Brassica junceaBrassica napus61.6758.7593.58732forward
CNT30234332Brassica junceaBrassica oleracea62.0961.6294.03737forward
CNT30260763Brassica junceaBrassica rapa59.39102.3297.16705forward

Expression of CNT3074281

Peptides detected in this lncRNA

>peptide 1 (33 aa)
SIEPYRANGTTFIHLESTIGKHKEQRLYYNISE*

Sequence

>CNT3074281
TCTCAATTGAACCATACAGAGCAAACGGCACAACTTTTATACACTTAGAAAGCACAATAGGGAAACATAAAGAGCAACGACTATATTATAATATTTCAGA
ATAATCCGATTTGGTTCATAACGGAAGAGAAAACAAGGACGCAAAGCGAGTTCATCAATTATTCAAAAGGGGCTTTATAAGACCCCAAAACATAAACCAT
AAGAAGTATTTAAAAGAAACGCAGACACTGACTTTTGAACCAACAAAGGACAAGAGTTTTAGAAACCTCCACGGAGACGGAGGACCAAGTGAAGAGTGGA
CTCCTTCTGGATGTTGTAGTCTGCCAAGGTGCGACCATCTTCCAACTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCCGGTGGGATTCCCTCCTTATCC
TGGATCTTGGCCTTAACATTGTCAATAGTGTCAGAGCTCTCCACCTCCAAAGTGATAGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCATACCACCAC
GGAGCCTGAGGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTTCTCCCGTCTTCCAACTGCTTGCCGGCGAAGATAAGCCTCTG
CTGATCCGGAGGGATTCCCTCCTTATCCTGAATCTTGGCCTTAACGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGATGGTCTTTCCGGTGAGA
GTTTTCACGAAGATCTGCATCTGAATTTCACAAACAACAGCGATCAATAACCAAAAGTCAACTAATTAAATCGAATCAAATCATCAACGAACCATAATCG
AAGCTTATCAACATAGATCCACGACTACTAACAAATCACTAATCAGATCCTAACGAGTAACTGACAGTAGATCAACAAAGGAAACAACAGATCGACGCGT
AACAGCGAAGACGAATTTTAACGACGAATCAAAATTCAACGAGTAGAGAAACAGCTCGCGATTCAAACGAAACAACTAATAGACGAAGAAATCAAGAAGC
TCACCTTGATTGAAGCTTGAGATTGAGAGAGAATTGAGAAGATTGATTATGATTATCGAATTTCGAAACTTTTATTAATTTGTGAAGGAGTTAAAGGTCT
CTAAGGTTTGATTTATACACAAGGATGAAGCCGACTAAGTCATGAGAGAGGTAAAGGCAGTGGACACGTGTATGTTGCCTTAGTTTT