« Back to Brassica juncea search


Detailed information on CNT3074201


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8W4H7|EF1A2_ARATH, E-value = 3e-150

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30518094Brassica junceaJuglans regia92.0289.9684.56842forward
CNT30234210Brassica junceaBrassica oleracea10083.1196.5915forward

Expression of CNT3074201

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MTPTATVCLMSLTAKRPKGGYSEKVSTTMGLVGVIFTIPASPFFKNLGSFSISLPDRLSILVRISENLTAMWEVWQSRTGA*

>peptide 2 (93 aa)
MMMTWDVKLAAPLAGSSLELDATYPRLRSLTATFLTLNPTLSPGSASTRDSWCISTDLTSVVNPEGANVTTIPGLSIPVSTRPTGTVPIPPIL*

Sequence

>CNT3074201
ACACATCAAAGTTTTTTAAAGCAAAGTGAACCAAGCAAGAGATAAGTCTCATCATTTGGCACCCTTCTTGACTGCAGCCTTGGTGACCTTGGCACCGGTT
GGGTCCTTCTTGTCAACACTCTTGATGACACCAACAGCCACGGTCTGCCTCATGTCCCTAACAGCGAAACGTCCCAAAGGTGGGTACTCTGAGAAAGTCT
CAACAACCATGGGCTTGGTTGGAGTCATCTTCACCATACCAGCATCTCCATTCTTCAAAAACTTAGGCTCCTTCTCGATCTCTTTACCAGATCGTCTGTC
AATCTTGGTGAGGATCTCAGAGAACTTGACTGCAATGTGGGAGGTGTGGCAATCAAGGACAGGGGCGTAACCGTTACCGATCTGACCAGGGGTGGTTCAT
GATGATGACCTGGGATGTGAAGTTAGCAGCTCCCTTAGCAGGATCATCCTTGGAGTTGGATGCAACATACCCACGCTTAAGATCCTTGACGGCAACATTC
TTGACATTGAATCCGACATTGTCACCAGGAAGCGCTTCCACAAGAGACTCGTGGTGCATCTCAACGGACTTGACCTCAGTGGTTAACCCTGAAGGAGCGA
ATGTCACAACCATACCGGGCTTGAGCATACCAGTCTCCACACGACCCACTGGCACCGTTCCAATACCACCGATCTTATAGACATCCTGAAGTGGTAGACG
CAGGGGCTTGTCTGAAGGCCTCTTTGGCTCGTTGATCTGGTCAAGAGCCTCAAGGAGAGTTGGTCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCAATC
ATGTTGTCACCCTCGAATCCAGAGATGGGGACGAATGGGATTTTGTCAGGGTTGTACCCGACCTTCTTCAAGTAGGAAGACACCTCCTTGATGATCTCAT
CGTACCTAGCCTTGG