« Back to Brassica juncea search


Detailed information on CNT3074121


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FK62|SAU24_ARATH, E-value = 2e-45

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378892Brassica junceaArabidopsis thaliana54.8834.8484.79309reverse complement
CNT30478271Brassica junceaArabidopsis halleri61.8169.8888.51348forward

Expression of CNT3074121

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MKTEFIFNLSGKLIREERVKIHLYTMNKSNSSSKNKMVNKHH*

>peptide 2 (32 aa)
MRLAPNISSSGPGLHQRTLQETPLVLKMSFCL*

Sequence

>CNT3074121
GGTTATTCAAGTGTTGTGTATATCGTTTTCAAAGATCGATCCAAAACGTATTACATGAGATCGTGTAGATTGCATGAAAACTGAATTCATTTTTAACCTT
TCCGGAAAACTCATTCGAGAAGAAAGAGTAAAGATTCATCTATATACAATGAATAAATCTAACTCTAGTTCTAAGAACAAAATGGTGAATAAACATCACT
GAAGCCGAGAAGTAACATTGATGAAAGTATCTTCAGGACAAGGAATCGTCAAGCCACCCATTGGATGATCAAATCCAAACTCTTCCTCGGATTTGCTGAG
AAGCGCTTGAAACGAAGGCTGGTTTAAGTATGAGATTGGCACCAAATATCTCTTCTTCTGGACCTGGTCTTCACCAACGTACACTGCAAGAAACCCCTTT
GGTGCTGAAAATGTCTTTTTGCTTGTAACCGGTACAGAAAAGTTAATAATCCTCTTTGCACCCAAGAGACCTCTAAACAAAGCCATTTTCTTGTGTCTGG
AAAATTGAAATTTGAAGCTTGTGAAAAAAGGTTAGATGCTCAGATTCAAGGTTTGGATTGCTT