Detailed information on CNT3074067


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8W4H7|EF1A2_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3059458Brassica junceaArabidopsis lyrata93.775.891.81952forward
CNT30449969Brassica junceaSaccharum spontaneum92.7274.6484.82942forward
CNT30594462Brassica junceaEragrostis curvula93.2181.3686.59947forward

Expression of CNT3074067

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MLSPSNPEMGTNGILSGLVDLSIMLSPSNPEMGTNGILSGLYPTFFK*

>peptide 2 (81 aa)
MTPTATVCLMSLTAKRPKGGYSEKVSTTMGLVGVIFTIPASPFFKNLGSFSISLPDRLSILVRISENLTAMWEVWQSRTGA*

>peptide 3 (93 aa)
MMMTWEVKLAAPLAGSSLELDATYPRLRSLTATFLTLKPTLSPGSASTRDSWCISTDLTSVVNPEGANVTTIPGLSIPVSTRPTGTVPIPPIL*

>peptide 4 (41 aa)
MGFCQGWWTSQSCCHPRIQRWGRMGFCQGCTRPSSSRKTPP*

Sequence

>CNT3074067
CCTCAAACACATCAAAGTTTTTTAAAGCAAAGTGAACCAAGCAAGAGATAAGTCTCATCATTTGGCACCCTTCTTGACTGCAGCCTTGGTGACCTTGGCA
CCGGTTGGGTCCTTCTTGTCAACACTCTTGATGACACCAACAGCCACGGTCTGCCTCATGTCCCTAACAGCGAAACGTCCCAAAGGTGGGTACTCTGAGA
AAGTCTCAACAACCATGGGCTTGGTTGGAGTCATCTTCACCATACCAGCATCTCCATTCTTCAAAAACTTAGGCTCCTTCTCGATCTCTTTACCAGATCG
TCTGTCAATCTTGGTGAGGATCTCAGAGAACTTGACTGCAATGTGGGAGGTGTGGCAATCAAGGACAGGGGCGTAACCGTTACCGATCTGACCAGGGTGG
TTCATGATGATGACTTGGGAAGTGAAGTTAGCAGCTCCCTTGGCAGGGTCATCCTTGGAGTTGGATGCAACATACCCACGCTTAAGATCCTTGACGGCAA
CATTCTTAACATTGAAACCCACGTTGTCACCTGGAAGCGCTTCAACAAGAGACTCGTGGTGCATCTCAACGGACTTGACCTCAGTGGTCAACCCTGAAGG
AGCGAATGTCACAACCATACCGGGCTTGAGCATACCAGTCTCCACACGACCCACTGGCACCGTTCCAATACCACCGATCTTGTAGACATCCTGAAGTGGT
AGACGCAGGGGCTTGTCTGAAGGCCTCTTTGGCTCGTTGATCTGGTCAAGAGCCTCAAGGAGAGTTGGTCCCTTGTACCAGTCAAGGTTGGTGGACCTCT
CAATCATGTTGTCACCCTCGAATCCAGAGATGGGGACGAATGGGATTTTGTCAGGGTTGGTGGACCTCTCAATCATGTTGTCACCCTCGAATCCAGAGAT
GGGGACGAATGGGATTTTGTCAGGGTTGTACCCGACCTTCTTCAAGTAGGAAGACACCTCCTTGATGATCTCATCGTACCTAGCCTTGGAGTACTTGGGG
GTAGTGGCATCCATCT