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Detailed information on CNT3074040


BLAST search results

BLAST vs Swiss-Prot:
sp|O81305|PKSC_ARATH, E-value = 7e-10

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30281985Brassica junceaChenopodium quinoa40.957.5883.98181forward
CNT30379505Brassica junceaManihot esculenta24.4318.7885.19108forward
CNT30628905Brassica junceaVigna unguiculata56.5617.5182.8250forward
CNT3045136Brassica junceaPrunus dulcis28.9620.5881.25128forward
CNT30156272Brassica junceaPistacia vera57.2416.4181.42253forward
CNT3096581Brassica junceaSolanum tuberosum27.66.5383.61122forward
CNT30192533Brassica junceaSecale cereale29.4119.4685.38130forward
CNT3087878Brassica junceaVigna radiata57.0116.1283.33252forward
CNT30171320Brassica junceaTrifolium pratense3132.0180.29137forward
CNT30143557Brassica junceaMedicago truncatula45.2519.179200forward
CNT30469647Brassica junceaSaccharum spontaneum23.985386.79106forward
CNT30610059Brassica junceaGossypium raimondii46.6130.1682.52206forward
CNT30647274Brassica junceaRosa chinensis29.197.4280.62129forward
CNT30128249Brassica junceaCorymbia citriodora27.1517.5483.33120forward
CNT30365392Brassica junceaSorghum bicolor23.9818.2886.79106forward
CNT30355449Brassica junceaLactuca sativa60.4146.7681.27267forward
CNT30155426Brassica junceaPrunus persica13.5720.3488.3360forward
CNT30574518Brassica junceaVitis vinifera24.896.6883.64110forward
CNT30114125Brassica junceaFicus carica24.2113.8685.98107forward

Expression of CNT3074040

Peptides detected in this lncRNA

>peptide 1 (44 aa)
VRVWEDGLSSRHHLEDGLLSSRDIRVRADNERGCTVAEESLSHE*

>peptide 2 (47 aa)
MGFSPAETSGSEPTMSAAAPSLKRACPTSESRWVSEGPRKGEGQGAW*

>peptide 3 (29 aa)
PSLGGWSEQQTPSRRWASLQQRHQGPSRQ*

Sequence

>CNT3074040
GTCCGAGTCTGGGAGGATGGTCTGAGCAGCAGACACCATCTCGAAGATGGGCTTCTCTCCAGCAGAGACATCAGGGTCCGAGCCGACAATGAGCGCGGCT
GCACCGTCGCTGAAGAGAGCTTGTCCCACGAGTGAGTCAAGGTGGGTGTCAGAAGGGCCACGGAAGGGCGAAGGCCAAGGAGCTTGGTGAGCTGGTAGTC
AGCACCAGGCATGTCAACTCCAGAGGTGGTGCAGAAGACAACGTGTGTGATCTTTGACTTAGGCTGACCCCACTCCTTGATGGCCTTCACTGCTGCATCT
TTGCCTAGCTTAGGGACTTCAACCACCACGAGGTCTTGTCTAGCGTCGAGAGAAGGAGCCATGTAGGCGCACATGTTAGGGTTCTCTTTCAAGAACTCCT
CGGTCAAGTGCATGTGGCGTTTTCTTATCGTCGACTTATCGC