Detailed information on CNT3073437


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 4e-157

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30541271Brassica junceaBrassica napus10089.1695.98921forward
CNT30233494Brassica junceaBrassica oleracea80.67102.294.35743forward
CNT30214147Brassica junceaHelianthus annuus75.0385.9584.23691forward

Expression of CNT3073437

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MRRCWSGGIPSLSWILALTLSMVSELSTSSVMVLPVKVFTKICIPPRSLSTK*

>peptide 2 (42 aa)
MSLCWSGGIPSLSWILALTLSMVSELSTSKVIVFPVRVLTKIC

>peptide 3 (72 aa)
LACKQHNIQSTIGKSKKQRLLYFTIEKSDLVHKERENKDARVHQLFIRGFIKPQNTNHKYFIKENQILTFNP*

>peptide 4 (66 aa)
MKSRLLLDVVVGKSSSILQLLAGKDEPLLVRWDSLLILDLGLNVVDGIGAFNLQSDRLSGQSFNKDL

Sequence

>CNT3073437
CTAGCTTGCAAACAGCACAACATACAAAGCACAATAGGGAAAAGTAAAAAGCAACGGCTATTATATTTCACAATAGAGAAATCCGATTTGGTTCACAAGG
AAAGAGAAAACAAGGACGCAAGAGTTCATCAATTATTCATCAGAGGCTTTATAAAACCCCAAAACACAAACCATAAGTACTTTATAAAAGAAAACCAGAT
TCTAACTTTTAACCCGTAACAGGCGGAGAGTTTTAGATACCACCACGGAGACGGAGGACCAAGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCTGCTA
AGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAAT
GGTGTCGGAGCTCTCCACCTCCAGTGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAAATCTGCATACCACCACGAAGCCTGAGTACCAAGTGAAGTGTC
GACTCCTTCTGGATGTTGTAGTCCGCAAGAGTGCGACCATCCTCGAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCTTTGT
CTTGGATCTTGGCTTTGACGTTGTCAATAGTGTCGGAGCTTTCAACCTCCAAAGTGATAGTCTTTCCCGTCAAAGTCTTAACGAAGATTTGCATACCACC
ACGGAGCCTGAGGACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTTCTTCCATCCTCCAACTGCTTGCCGGCAAAGATGAGCCTC
TGCTGGTCCGGTGGGATTCCCTCCTTATCCTGGATCTTGGCCTTAACGTTGTCGATGGTATCGGAGCTTTCAACCTCCAAAGTGATCGTCTTTCCGGTCA
GAGTTTTAACAAAGATCTGCA