Detailed information on CNT3073349


BLAST search results

BLAST vs Swiss-Prot:
sp|Q58G87|UBQ3_ORYSJ, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30546269Brassica junceaIpomoea triloba72.3989.6483.23805forward
CNT3094992Brassica junceaSolanum tuberosum81.8378.1884.07910forward
CNT30193041Brassica junceaSecale cereale76.2643.9686.56848forward
CNT30233220Brassica junceaBrassica oleracea69.4299.6197.67772forward
CNT3021694Brassica junceaPopulus trichocarpa61.5170.5984.94684forward
CNT3066527Brassica junceaSelaginella moellendorffii74.6499.483.49830forward
CNT30114931Brassica junceaEutrema salsugineum82.5582.7887.47918forward

Expression of CNT3073349

Peptides detected in this lncRNA

>peptide 1 (60 aa)
GKSKKQRLLYFTIEKSDLVHKERENKDARVHQLFIRGFIKPQNTNHKYFIKENQILTFNP*

>peptide 2 (42 aa)
MSLCWSGGIPSLSWILALTLSMVSELSTSKVIVFPVRVLTKIC

>peptide 3 (66 aa)
MKSRLLLDVVVGKSSSILQLLAGKDEPLLVRWDSLLILDLGLNVVDGIGAFNLQSDRLSGQSFNKDL

>peptide 4 (52 aa)
MRRCWSGGMPSLSWILALTLSMVSELSTSNVIVLPVRVFTKICMPPRSLRTK*

>peptide 5 (52 aa)
MRRCWSGGIPSLSWILALTLSMVSELSTSSVMVLPVKVFTKICIPPRSLSTK*

Sequence

>CNT3073349
GGGAAAAGTAAAAAGCAACGGCTATTATATTTCACAATAGAGAAATCCGATTTGGTTCACAAGGAAAGAGAAAACAAGGACGCAAGAGTTCATCAATTAT
TCATCAGAGGCTTTATAAAACCCCAAAACACAAACCATAAGTACTTTATAAAAGAAAACCAGATTCTAACTTTTAACCCGTAACAGGCGGAGAGTTTTAG
ATACCACCACGGAGACGGAGGACCAAGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCTGCTAAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGA
TGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAGTGTGATGGTCTT
GCCGGTCAAGGTCTTCACAAAAATCTGCATACCACCACGAAGCCTGAGTACCAAGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGAGTGCGA
CCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCTG
AGCTCTCAACCTCCAATGTGATAGTCTTGCCGGTAAGGGTCTTCACAAAAATCTGCATGCCACCACGGAGCCTGAGGACCAAGTGAAGCGTAGACTCCTT
CTGAATGTTGTAATCGGCCAAGGTGCGACCATCCTCGAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCTTTGTCTTGGATC
TTGGCTTTGACGTTGTCAATAGTGTCGGAGCTTTCAACCTCCAAAGTGATAGTCTTTCCCGTCAAAGTCTTAACGAAGATTTGCATACCACCACGGAGCC
TGAGGACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTTCTTCCATCCTCCAACTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTC
CGGTGGGATTCCCTCCTTATCCTGGATCTTGGCCTTAACGTTGTCGATGGTATCGGAGCTTTCAACCTCCAAAGTGATCGTCTTTCCGGTCAGAGTTTTA
ACAAAGATCTGC