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Detailed information on CNT3073315


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FK62|SAU24_ARATH, E-value = 2e-45

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30560985Brassica junceaActinidia chinensis16.9720.1382.93123forward
CNT30542807Brassica junceaBrassica napus24.6988.1889.39179forward
CNT30238736Brassica junceaBrassica oleracea47.5966.9996.81345reverse complement

Expression of CNT3073315

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MILTESLNSFEEVYDKIQFIGLLVCWLMIVRMG*

>peptide 2 (57 aa)
MKAGSSMRLAPHISSSDSLLRTQQETLLVPPRLHFCLLRSDQESSLHPIDFSRKPFL*

Sequence

>CNT3073315
CTGGCCTTTCTTTAACAATCGATCAAAAACTTATTTGACATGATATCGTGCCTGTGTCATAACTCATAAGAAATGGTATTCATTCTCTCAAGTCTCAACA
ATTCTTTCAAAAAGGAGGAAGATGAGAAAAAAAATGTCCTATAATATACAATGATTTACAATGAATAAGTCTATTGCTAACTCAATGGAGACAAATTGCT
AACTCAAGAAGAAGAAAAAATTTGGATAGTCATCATTGGAGCCTTGATGTTACGTTGATGAAGATATCTTCGGGACAAGGGATCGTTAAGCCACCCATCG
GGTGATCAAACCCAAACTCTTCCTCAGATTTACTTAGAAGTGCTTGAAATGAAGGCTGGCTCAAGTATGAGACTGGCACCACATATCTCTTCTTCTGACT
CTCTCCTACGTACACAGCAAGAAACCCTTTTGGTGCCGCCGAGGTTGCACTTTTGCTTGCTGCGGAGCGACCAAGAATCTTCTTTGCACCCAATAGACTT
CTCACGAAAGCCATTTCTATGATTTTGACTGAGAGTTTGAATTCTTTTGAAGAGGTGTATGACAAGATACAATTTATTGGATTGCTTGTTTGTTGGTTGA
TGATTGTAAGAATGGGCTAGGTGATGTGTATATATAGAAAGATCAACGAATGAGTTGAAGCTTCTCTCAAAAATCATTGAAGCTTGTGGTCTTCAAGTGT
GGGACAGACTAGAACAGGGTTTCAC