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Detailed information on CNT3073188


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30238500Brassica junceaBrassica oleracea21.0679.5393.57171reverse complement
CNT30614120Brassica junceaArabis alpina28.3333.3390230forward

Expression of CNT3073188

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MLLKFEQATFYLLRSIFQAIELHIFLPIQE*

>peptide 2 (40 aa)
MSDLTIEPTQRNNPHRVKTCKHEFSLGPLRRIVMVTLCFM*

>peptide 3 (69 aa)
MAPSRNVIVATGLVVFASAGLAFPFYMASSKKPVIDSTKPLPPQATFRGPYINTGSRDVGPDHRTYPKK*

Sequence

>CNT3073188
CAATAAAGCTTATCTCTAGCCCAATATCAATTTCTATCAGAGCGTAAAGAGCATATCGCCGGTTTCATAGACCTCCGCGACTCGGGTGTATCAATCCCCA
ATCCTGAATACCCAAATTACTTAACTGAGTCAACTCGACCGCCTCACATCCCAAACGCTAGTTTTGGAATGGCACCATCACGTAACGTCATTGTAGCCAC
GGGTCTGGTTGTTTTCGCATCTGCAGGCTTAGCTTTCCCCTTTTACATGGCATCGTCAAAGAAACCAGTGATTGATTCAACAAAACCGCTACCTCCTCAA
GCAACTTTTAGAGGACCTTACATCAACACTGGTTCTCGCGATGTCGGACCTGACCATCGAACCTACCCAAAGAAATAATCCTCATCGAGTCAAGACATGT
AAACATGAGTTTTCATTGGGTCCCTTAAGAAGAATTGTTATGGTAACGCTATGTTTCATGTAACGAACGCTATGATGAAGACCTTCCCATAAACACGACC
AGACCAGTCTAGCCAGTGAGATGGTTTTGATTAATAGCTCGAGGATTTGAATATACTATTATGTCAAAACAAACCATTTTCATCATTGCGATTTTGAGTT
TGCTTGAATACGTTATTTTGTAATATGTTATTGAAGTTCGAACAAGCCACCTTTTATCTATTACGAAGCATTTTTCAGGCAATAGAACTTCATATATTTC
TTCCAATACAAGAATAACTAATTTTCCAAAGTACAAAGCCTAATGAAATAACCAAAAGCTTAAAAACAACAGACTACTAGTTAAAACCATTACAAATCTC
TCTCGAGATCTA