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Detailed information on CNT30730658


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690834Corchorus capsularisOryza sativa44.0838.6288.44346reverse complement
CNT30677945Corchorus capsularisSetaria viridis44.0822.8487.86346forward
CNT3021516Corchorus capsularisCitrullus lanatus61.7826.3794.02485forward
CNT30526646Corchorus capsularisPhaseolus vulgaris18.2220.2585.31143reverse complement
CNT30198947Corchorus capsularisPisum sativum24.7123.2988.14194forward
CNT30502643Corchorus capsularisNicotiana attenuata61.0236.9984.55479forward
CNT30163195Corchorus capsularisPistacia vera28.6696.5791.11225reverse complement
CNT30191576Corchorus capsularisSecale cereale44.0888.2788.15346reverse complement
CNT30297822Corchorus capsularisTriticum aestivum44.0883.9888.15346reverse complement
CNT3082974Corchorus capsularisBrassica juncea62.9358.1287.85494reverse complement
CNT3017923Corchorus capsularisZea mays33.7694.6485.66265forward
CNT30610477Corchorus capsularisGossypium raimondii39.3645.5897.09309forward
CNT30232463Corchorus capsularisAnanas comosus14.7849.1594.83116reverse complement
CNT30684722Corchorus capsularisTriticum urartu44.0832.4388.15346forward
CNT30356763Corchorus capsularisLactuca sativa52.9976.7590.62416reverse complement
CNT30644293Corchorus capsularisCannabis sativa13.2532.493.27104forward
CNT3056176Corchorus capsularisAmborella trichopoda33.255.6285.82261forward
CNT30319059Corchorus capsularisAsparagus officinalis62.2960.1589.98489forward
CNT30150789Corchorus capsularisBrachypodium distachyon30.0628.5789.83236forward
CNT30550344Corchorus capsularisOryza brachyantha28.6695.7489.33225reverse complement
CNT30723626Corchorus capsularisLupinus angustifolius17.0723.193.28134reverse complement

Expression of CNT30730658

Peptides detected in this lncRNA

>peptide 1 (40 aa)
SSTSFLFTYLLLFFSPHFFYFLFFYFIPFHHSLSPIGLIL*

>peptide 2 (39 aa)
MRLCTLRIGIHFLKDPGFRALVSLRDPFDDLCCVEGISI*

>peptide 3 (48 aa)
FFYFIFIYLFITFFFPSFFLFPFFLFYSLPSFLKSHRFDPIESDPFSH*

>peptide 4 (31 aa)
MHSSNRNPFSERSWLSCFGESPRSFRRPMLC*

>peptide 5 (32 aa)
LLLHFYLLIYYFFFPLIFFISFFFILFPSIIP*

Sequence

>CNT30730658
TTCTTCTACTTCATTTTTATTTACTTATTTATTACTTTTTTTTTCCCCTCATTTTTTTTATTTCCTTTTTTTTTATTTTATTCCCTTCCATCATTCCTTA
AGTCCCATAGGTTTGATCCTATAGAATCTGACCCATTTTCTCATTGAGCGAGGGGTACGAAATAAATCAGATTGGTTTTTCGATCAAAAGCACTGTGTGA
AATCTTCGGTTTTTTCCTCTTTCTCTATCCCATAGGTACAGCATTTGAATCAATAGAGAACCTTTTCCTCTGTATCTATATGAATCGATATTATTACATT
CCAATTCCTTACTGATACCCCCCAAGGAAAATCCCGAATTGGATCCCAAATTGACGGGTTAGTGTGAGCTTATCCATGCGGTTATGCACTCTTCGAATAG
GAATCCATTTTCTGAAAGATCCTGGCTTTCGTGCTTTGGTGAGTCTCCGAGATCCTTTCGACGACCTATGTTGTGTTGAAGGGATATCTATATGATCCGA
TCGATTGCGTAAAGCCCGCGGTAGCAACGGAACCGGGGAAAGTATACAGAAAAGACAGTTCTTTTCTTTCTATTCTATTAGTATTTTCTATTCTATTTTT
TCTATTCTATTAGTATTAGAATTAGTATTAGATTAGTATTCTATTCTATTAGTATTAGATTAGTATTAGTTAGTGATCCCGGCTCAGTGAGTCCTTTCTT
CCGTGATTAGCTATTGGCGCCAGTCCTAGTCCTACATTTTGTCTCTGTGGACCGAGGAGAAAGGGGGCTCAGCGGGAAGAGGATT