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Detailed information on CNT30730639


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30354577Corchorus capsularisLactuca sativa20.247.6794.1268reverse complement

Expression of CNT30730639

Peptides detected in this lncRNA

>peptide 1 (31 aa)
KGFLLFFWLSIILFRLISILYSLLLIIFFIF*

>peptide 2 (52 aa)
KDSFSFFGCPLFYLDLFLFYTPYYLLYSLYSKFSILINLKKKIKDYEKYGKI*

>peptide 3 (65 aa)
MKNMEKSKLRIEIFDEWDRNCYYFDTRKGILHTPFLCRGLGRRKILLGIICSLLYILPFYSPLTYL

>peptide 4 (49 aa)
MGSELLLFRHKKRNFTHPFLVPRTRKTKNTPWNYLFPSLYPSFLFSAYLS

Sequence

>CNT30730639
AAAAGGATTCCTTCTCTTTTTTTGGTTGTCCATTATTTTATTTAGACTTATTTCTATTTTATACTCCTTATTACTTATTATATTCTTTATATTCTAAGTT
TTCTATTCTAATAAATCTAAAAAAAAAAATAAAGGATTATGAAAAATATGGAAAAATCTAAACTAAGAATAGAAATCTTTGACGAATGGGATCGGAATTG
TTATTATTTCGACACAAGAAAAGGAATTTTACACACCCCTTTCTTGTGCCGAGGACTAGGAAGACGAAAAATACTCCTTGGAATTATTTGTTCCCTTCTT
TATATCCTTCCTTTCTATTCTCCGCTTACTTATCTT