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Detailed information on CNT30730610


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONBNAT004661, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30503447Corchorus capsularisNicotiana attenuata95.5860.7397.151016reverse complement
CNT30711335Corchorus capsularisGlycine max34.994.6494.61371reverse complement
CNT3044711Corchorus capsularisPrunus dulcis44.8710098.95477reverse complement
CNT30193801Corchorus capsularisSecale cereale101.4176.3594.061078forward
CNT30588765Corchorus capsularisMusa acuminata56.3585.8295.16599reverse complement
CNT30511396Corchorus capsularisSolanum lycopersicum57.2966.5692.61609forward
CNT30266045Corchorus capsularisBrassica rapa31.1474.7292.45331forward
CNT3017993Corchorus capsularisZea mays101.4157.2894.431078forward
CNT30352524Corchorus capsularisEragrostis tef18.0645.8294.27192reverse complement
CNT30412061Corchorus capsularisPapaver somniferum95.3950.2596.751014forward

Expression of CNT30730610

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MPLEPRASWFSPKCVEAQQLTGHLGVKHCFGAGRESGTKSRQTLNTRYDLKITGVEVGQ*

>peptide 2 (29 aa)
MGHVESRVNQRGPPCKAKYSWVTDSEVVP*

Sequence

>CNT30730610
TTCAAACGAGGAAAGGCTTACGGTGGATACCTAGGCACCAGAGGAGAGGAGGCGTAGTAAGCGACGGAATGCTTACGGGGAGTTGAAAATAAGCGTAGAT
CCGGAGATTCCCGAATAGGTCAACCTTTCGAACTGCTGCTGAATCCATTGGGCTAGGCAAGAGACAACCTGGCGAACTGAAACATCCTAGTAGCCGGAGG
AAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCTAAACCGTGAAAGCGGGGTTGTGGGAGAGCAATAAAAGCGTCGTGC
TGCTAGGCGAAGCGGTGAAGTGCCGAACCTAGATGGCTATAGTCCAGTAGCCGAAAGCATCACTAGCTTACGCTCTGACCCGAGTAGCATGGGGCACGTG
GAATCCCGTGTGAATCAGCGAGGACCACCTTGCAAGGCTAAATACTCCTGGGTGACCGATAGCGAAGTAGTACCGTGAGGGAAGGGTGAAAAGAACCCCC
GTCGGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCCCAGGGCTCTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA
TAGGCAGTGGCTTGGTTAAGGGAACCCACCGGAGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTA
TCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCCAC
TCGAACCCAGAGCTAGCTGGTTCTCCCCGAAATGCGTTGAGGCGCAGCAGTTGACTGGACATCTAGGGGTAAAGCACTGTTTCGGTGCGGGCCGCGAGAG
CGGTACCAAATCGAGGCAAACTCTGAATACTAGATATGACCTCAAAATAACAGGGGTCGAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCG
AGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGGAGGT