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Detailed information on CNT30730607


BLAST search results

BLAST vs Swiss-Prot:
sp|P93276|M030_ARATH, E-value = 2e-33

BLAST vs NONCODE:
NONTPRT002187, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30113381Corchorus capsularisFicus carica41.66100.2295.08447reverse complement

Expression of CNT30730607

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MRTISRRRGAYSLYFLLVKRTTSNGVPFA*

>peptide 2 (35 aa)
SVPYYFMEKNALDGCPGIEKEGRFNRRKAMGRYRL*

>peptide 3 (50 aa)
VYLITLWKRMHWMDARALRRKDALIGERPWGDTVCDPWISDRETVSKLRG*

>peptide 4 (29 aa)
MMSMARGRALNGLGWPHFALPTPGKLRIQA

>peptide 5 (33 aa)
MLSKVFTSFSPGFIRFFVYWMMEKTSKPLRSEL*

Sequence

>CNT30730607
AGTGTACCTTATTACTTTATGGAAAAGAATGCATTGGATGGATGCCCGGGCATTGAGAAGGAAGGACGCTTTAATAGGCGAAAGGCCATGGGGAGATACC
GTCTGTGATCCATGGATCTCCGATCGGGAAACCGTATCCAAGCTCCGTGGTTAGTCTGCGCTCTTTGGACTTTTCAAACTTAGCGAACTGAAACATCTTG
ATAGCTAAAGGAAGGTAAATCAACCGAGACCCCGTTAGTAGCGGCGAGCGATAGCGGATTGGGGTTTTTAAGAAAAACAAAGACTTCGCACTTTAAATGC
TCAGCAAAGTGTTCACTTCTTTTTCGCCAGGTTTCATTCGATTTTTTGTGTATTGGATGATGGAAAAAACCAGCAAGCCACTGCGCAGTGAACTGTAATT
GTGAAAAGGTTGGAAGATCTGGCCAAAGAAGGTGATAGCCCTGTAGATTCGTTCCCATGGTTCGATCCTTCCCAGTAAAACGCGGCGTGTTCGAATTCTG
ATCGCTTTTACGCGAGAAAGGGGGACCACCCTCTAAGCCTAAGTATTCCTCAATGACCGATAGCGTACAAGTACCGTGAGGGAAAGGTGAAAAGAACCCT
ATGTTAGGGAGTGCAATAGAGAACCTGAGATCCGATGCGAACAATCAGTCGAAGGAGGGGAGCTTATAGCCTTTACTTTCTATTAGTAAAGCGCACAACC
TCTAACGGCGTACCTTTTGCATGATGGGTCAGCGAGTAAATGGGAAGAGCGGCTTAAGCCATTAGGTGTAGGCGCTTTCCAGAGGTGGAATCTTCTAGTT
CTTCCTATTTGACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGAGGACCGAACCCACGTATGTGGCAAAATACG
GGGATGACTTGTGGCTAGGGGTGAAAGGCCAACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGTATGATGTCGATGGCCCGA
GGTAGAGCACTCAATGGGCTAGGGTGGCCCCATTTCGCCTTACCAACCCCAGGGAAACTCCGAATACAGGCCT