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Detailed information on CNT30730571


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3021511Corchorus capsularisCitrullus lanatus8.7227.9383.8793forward
CNT30606338Corchorus capsularisGossypium raimondii12.4626.4492.48133forward

Expression of CNT30730571

Peptides detected in this lncRNA

>peptide 1 (30 aa)
PYVRGRSGIRFFMYDLIYRVLPLIINWFRI*

>peptide 2 (50 aa)
MNIKQNSRVYFFISRVEKSTSNIFLFTFLYQKKRKVPIFFFFFQSNPILN*

>peptide 3 (29 aa)
MNFLNDLFNSRKKRFLLSILVDPQIYPSP*

Sequence

>CNT30730571
CCTTATGTTAGGGGGCGTTCGGGGATTCGATTTTTTATGTATGATTTGATTTATCGTGTACTGCCCCTTATAATTAATTGGTTTCGAATATAAAATTTTT
TTTCTTTTTATTGGTCCATAACCTGACTTAGGTAAATCCACGAACTCAATTTGTTTATTCTTTCCTATTTTTACTAGTCGTCTGAACCTGAACCATGAAT
TGTGTTATGACTCATCAATCAGTCAGATAGATGAATTTTTTGAACGACCTGTTCAATTCAAGGAAGAAGCGATTCCTTCTCTCGATACTGGTTGATCCCC
AGATCTACCCCTCTCCCTAATCTTATTCTTGGATCTTGTTAGTGAGATTGAGAAAAATCAATAGTTTTATGTATTCTTCTAATTTCTATGTGTATTAAAT
TACTTATGTGTATTAAATTACTATAGTATGATATATATATTTTCTTTTTTTATTTCTTTTTGTTTTCTTTCTCATATTTCCTTCAGATGAATATAAAACA
AAACTCCAGAGTATATTTTTTCATTTCACGGGTCGAGAAATCCACTTCGAATATTTTTCTATTTACTTTTTTATATCAGAAAAAGAGAAAAGTTCCTATT
TTTTTTTTCTTTTTTCAATCTAATCCAATATTAAATTAAATAATAGGAGACTTAAAATGAAAGTTTCTTTTTCGCACTCACTCTACGTCACATTGTCAGA
ACAAAAGTGTCATATGGATCGATATGGAAATATTTGATATGTGAAGACATGATTTAATTTAGATTTCTATCTAATAAATTTTATATAGATAGAAATGGAT
CTTATTGTATTCTGGAATCAAAGAAAGATAAGATATTGAAAAAGGCTCTTAGGTTGTAACTTGAAATAAACGTTTCTCTATATCTCTATCGAGGAATAGA
ATATTAATTTATTCCTATGGAACACCTAGGAACAAGAAGATTGAATCAGAAATATCGACAGATTCTTGTGGAGTCCAAATAAATATGAGATAAAAAAATC
TGCTGTTCCAATTTCATCTCTATCGAATTTGGAATATCAGAATAGTGGATATAGTCACGATTCAATG