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Detailed information on CNT30730558


BLAST search results

BLAST vs Swiss-Prot:
sp|P93276|M030_ARATH, E-value = 8e-34

BLAST vs NONCODE:
NONGMAT000950, E-value = 8e-161

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30712732Corchorus capsularisGlycine max69.246.8294.9647forward
CNT30605211Corchorus capsularisGossypium raimondii84.7158.3293.06792forward
CNT30364089Corchorus capsularisSorghum bicolor21.2843.8390.95199forward
CNT30577866Corchorus capsularisOryza barthii26.6315.2996.39249reverse complement
CNT30335929Corchorus capsularisCynara cardunculus13.5834.4293.7127forward

Expression of CNT30730558

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MRTISRRRGAYSLYFLLVKRTTSNGVPFA*

>peptide 2 (30 aa)
MMSMARGRALNGLGWPHFALPTPGKLRIQA*

>peptide 3 (61 aa)
MLSKVFTSFSPGFIRFFVYWMMEKPASHCAVNCNCEKNPMLGSAIENLRSDANNQSKEGSL*

>peptide 4 (43 aa)
KRMHWMDARALRRKDALIGERPWGDTVCDPWISDRETVSKLRG*

Sequence

>CNT30730558
AAAAGAATGCATTGGATGGATGCCCGGGCATTGAGAAGGAAGGACGCTTTAATAGGCGAAAGGCCATGGGGAGATACCGTCTGTGATCCATGGATCTCCG
ATCGGGAAACCGTATCCAAGCTCCGTGGTTAGTCTGCGCTCTTTGGACTTTTCAAACTTAGCGAACTGAAACATCTTGATAGCTAAAGGAAGGTAAATCA
ACCGAGACCCCGTTAGTAGCGGCGAGCGATAGCGGATTGGGGTTTTTAAGAAAAACAAAGACTTCGCACTTTAAATGCTCAGCAAAGTGTTCACTTCTTT
TTCGCCAGGTTTCATTCGATTTTTTGTGTATTGGATGATGGAAAAACCAGCAAGCCACTGCGCAGTGAACTGTAATTGTGAAAAGAACCCTATGTTAGGG
AGTGCAATAGAGAACCTGAGATCCGATGCGAACAATCAGTCGAAGGAGGGGAGCTTATAGCCTTTACTTTCTATTAGTAAAGCGCACAACCTCTAACGGC
GTACCTTTTGCATGATGGGTCAGCGAGTAAATGGGAAGAGCGGCTTAAGCCATTAGGTGTAGGCGCTTTCCAGAGGTGGAATCTTCTAGTTCTTCCTATT
TGACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGAGGACCGAACCCACGTATGTGGCAAAATACGGGGATGACT
TGTGGCTAGGGGTGAAAGGCCAACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGTATGATGTCGATGGCCCGAGGTAGAGCA
CTCAATGGGCTAGGGTGGCCCCATTTCGCCTTACCAACCCCAGGGAAACTCCGAATACAGGCCTAGATCGTTTGTACAGACAGACTTTTGGGGTGCTAAG
ATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTAC