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Detailed information on CNT30730524


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30206551Corchorus capsularisHelianthus annuus72.210096.9548forward
CNT30628171Corchorus capsularisDaucus carota100.1375.5596.58760forward

Expression of CNT30730524

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MKFQRLPGPVGQGYRLVEYISVARVRPRTSKGITDLLLPQTSVA*

>peptide 2 (32 aa)
MKYECPRLSLLIITPIPKANTIGPKSYDVIPC*

>peptide 3 (44 aa)
MLSQLFAFHKSKNFTSDYEIRMPPTVPVNHYSDPEGQHNRTEIL*

Sequence

>CNT30730524
AAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGAATTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGA
AATTTCAAAGATTACCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA
CCTGTTATTGCCTCAAACTTCCGTGGCCTAAGCGGCCATAGTCCCTCTAAGAAGCTAGCCACGGAGGATCACCTCCGCGTAGCTAGTTAGCAGGCTCCAC
TCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCCTTGCGACCATACTCCCCCCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGA
GTCCTAAAAGCAACATCCGCCGATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGAGCCCCCAACTTTCGTTCTTGAT
TAATGAAAACATCCTTGGCAAATGCTTTCGCAGTTGTTCGCCTTTCATAAATCCAAGAATTTCACCTCTGACTATGAAATACGAATGCCCCCGACTGTCC
CTGTTAATCATTACTCCGATCCCGAAGGCCAACACAATAGGACCGAAATCCTATGATGTTATCCCATGCTAATGTATACAAGCGTAGGCCTGCTTTGAGC
ACTCTAATTTCTTCAAAGTAACAGCGCCGGAGGAACGACCCGGCCAATTAAGGCCAGGA