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Detailed information on CNT30730522


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2L907|PSAA_GOSHI, E-value = 1e-133

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696451Corchorus capsularisOryza sativa87.7310.9390.3608forward
CNT30382315Corchorus capsularisManihot esculenta30.169.9189209forward
CNT30202040Corchorus capsularisPisum sativum77.254.290.84535forward
CNT30219784Corchorus capsularisHordeum vulgare65.229790.49452forward
CNT3086956Corchorus capsularisVigna radiata31.317.9289.86217forward
CNT30511784Corchorus capsularisSolanum lycopersicum50.6553.4294.59351forward
CNT301761Corchorus capsularisZea mays87.7310.7391.45608forward
CNT30689225Corchorus capsularisTriticum urartu53.3931.4187.3370forward
CNT30621618Corchorus capsularisCajanus cajan33.1948.1293.91230forward
CNT30595862Corchorus capsularisOryza meridionalis78.7949.8689.74546forward
CNT30369168Corchorus capsularisOryza glumipatula32.1861.190.13223forward
CNT30430934Corchorus capsularisPapaver somniferum90.629.6193.47628forward
CNT30585620Corchorus capsularisEchinochloa crusgalli87.7311.8590.79608forward

Expression of CNT30730522

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MPLSQRKMMESWPKWALNILREISSKSPVWLSKS*

>peptide 2 (31 aa)
MTRPSPFLERSFYGILIYQNFYFWFRRTNNH*

>peptide 3 (36 aa)
TKPILGPLCDNGTNRQKALRPQRPMHQWRYNRVVIH*

>peptide 4 (37 aa)
MLAKSEKNQRLFVFLGNPRPHHHSRFLGLLLAKPPER*

Sequence

>CNT30730522
AACCAAGCCAATTTTGGGGCCGCTTTGTGATAATGGAACCAACCGGCAAAAAGCATTAAGGCCGCAAAGACCAATGCACCAATGGCGGTACAATAGAGTT
GTAATTCACTAGTTATTCCAGATGCTCGCCAAATCTGAAAAAAACCAGAGGTTATTTGTATTCCTCGGAAACCCCCGCCCACATCACCATTCAAGATTTC
TTGGCCTACTATTGGCCAAACCACCTGAGCGCTAGGTCCAATGTGAGTCGGATCGCTGAGCCATGCTTCATAATTTGAAAAACGAGCACCGTGGAAATAC
ATGCCACTCAGCCAAAGAAAGATGATGGAGAGTTGGCCGAAATGGGCACTAAATATTTTGCGAGAGATCTCCTCCAAATCACCAGTATGGCTATCGAAAT
CGTGAGCATCGGCATGTAGGTTCCAGATCCAAGTGGTAGTATCGGGCCCCTTAGCTATTGTTCTTGAGAAATGACCCGGCCTAGCCCATTCCTCGAAAGA
AGTTTTTACGGGATCCTTATCTACCAAAATTTTTACTTCTGGTTCCGGCGAACGAATAATCATTGAGTCCTCCTCTTTCCGGACAACACATACAAAGAGA
CCTGCCAAGAGTCAAGTAATTAGTGAACCTATGAGAGACGCTTATAATTAGTTTCTTTCTCTTCTATCTCTCATCTATCTTTTTTTTAGTTAT