Detailed information on CNT30730518


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30494210Corchorus capsularisOlea europaea21.48.6483.41211reverse complement
CNT30569398Corchorus capsularisActinidia chinensis83.9842.3797.1828forward
CNT30511593Corchorus capsularisSolanum lycopersicum37.3256.5391.03368forward
CNT30410483Corchorus capsularisPapaver somniferum97.0646.7797.39957forward
CNT30115272Corchorus capsularisEutrema salsugineum41.4884.1688.02409forward

Expression of CNT30730518

Peptides detected in this lncRNA

>peptide 1 (43 aa)
GLPKGNGGVQRFPRAGRRLALECKGRRELDCKTHPSSRDESRP*

>peptide 2 (66 aa)
ASQKVTEACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGRAVAQRIKVTLRITG*

>peptide 3 (71 aa)
MFQGLGCSPIKAVRELGSERRETVRSISGVGVRALRGPFPSTRGPGGTHLWCTSYRAHGKRWVAKCGADNC*

>peptide 4 (66 aa)
MTRSIQSGTRHLFSLFNSLTTRKPIVQLFDNMKKPKALPSLSIYPWDGRAEAFGVPSSQELGPHNH*

>peptide 5 (32 aa)
MEGRRPLVSPPVKNWGLIITSQYAFLFLARLSS

Sequence

>CNT30730518
AGGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGGGCCGGACGGAGATTGGCCCTCGAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACC
CACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAAGGATAACAGGC
TGATCTTCCCCAAGAGCTCACATCGACGGGAAGGTTTGGCACCTCGATGTCGGCTCTTCGCCACCTGGGGCTGTAGTATGTTCCAAGGGTTGGGCTGTTC
GCCCATTAAAGCGGTACGTGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGTCCATATCCGGTGTGGGCGTTAGAGCATTGAGAGGACCTTTCCCTAGT
ACGAGAGGACCGGGAGGGACGCACCTCTGGTGTACCAGTTATCGTGCCCACGGTAAACGCTGGGTAGCCAAGTGCGGAGCGGATAACTGCTGAAAGCATC
TAAGTAGTAAGCCCACCCCAAGATGAGTGCTCTCCTATTCCGACTTCCCCAGAGCCTCCGGTAGCACAGCCGAGACGGCAAGGGGTTCTCTGTCCCTGCG
GGGATCGAGCGACAGAAGTTTTGAGAATTCAAGAGAAGGTCACGGCGAGACGAGCCGTTTATCATTACGATAGGTGTCAAGTGGAAGTGCAGTGATGTAT
GCAGCTGAGGCATCCTAACAGACCGGTAGACTTGAACCTTGTTCCTACATGACCCGATCAATTCAATCAGGCACTCGCCATCTATTTTCATTGTTCAACT
CTTTGACAACACGAAAACCCATTGTTCAACTCTTTGACAACATGAAAAAACCAAAAGCTCTGCCCTCCCTCTCTATCTATCCATGGGATGGAAGGGCGGA
GGCCTTTGGTGTCCCCTCCAGTCAAGAATTGGGGCCTCATAATCACTAGCCAATATGCTTTTCTTTTTCTCGCACGCCTTTCTTCG