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Detailed information on CNT30730504


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30550163Corchorus capsularisIpomoea triloba100.0858.6896.631186forward
CNT30519028Corchorus capsularisJuglans regia100.0851.5997.131186reverse complement
CNT30619309Corchorus capsularisSesamum indicum100.0853.9895.031186reverse complement
CNT30526828Corchorus capsularisPhaseolus vulgaris85.0672.4196.431008forward
CNT30508053Corchorus capsularisNicotiana attenuata100.1785.3396.041187reverse complement
CNT30588049Corchorus capsularisMusa acuminata99.1654.9693.871175forward
CNT30543725Corchorus capsularisBrassica napus10058.9694.941185forward
CNT30311441Corchorus capsularisCamelina sativa97.7264.3793.351158forward
CNT30434071Corchorus capsularisPapaver somniferum100.0855.6595.281186forward

Expression of CNT30730504

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLSADCSSCFRGESGSPRAGRGTDWERSLRGPSPGN*

>peptide 2 (55 aa)
MPRHLISDAHEWINEIPTVPVYYPAKPQPRERAWQNQRGKKTLLSLTLVRLCEMT*

>peptide 3 (42 aa)
VCNNSPAESTSPENGRRLSARPIPGRRGKSQASMSRRARRSP*

>peptide 4 (34 aa)
MNGLTRFPLSLSTIQRNHSQGNGLGRISGERRPC*

Sequence

>CNT30730504
AGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCCGAAAATGGAAGGCGCTTAAGCGCGCGACCTATACCCGGCCGTCGGGGCAAGAGCCAGGCCTCG
ATGAGTAGGAGGGCGCGGCGGTCGCCGTAAAACCCGGGGCGTGAGCCCGGGCGGAGCGGCCGTCGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAAT
GAGAACTTTGAAGGCCGAAGAGGGGAAAGGTTCCATGTGAACGGCACTTGCACATGGGTTAGTCGATCCTAAGAGACGGGGGAAGCCCGTCCGATAGCGC
GCAAGCGCGAGCTTCGAAAGGGAATCGGGTTAAAATTCCTGAACCGGGACGCGGCGGCTGACGGCAACGTTAGGGAGTCCGGAGACGTCGGCGGGGGCCT
CGGGAAGAGTTATCTTTTCTGTTTAACGGCCGCCCACCCTGGAAACGGCTCAGCCGGAGGTAGGGTCCAGCGGCCGGAAGAGCACCGCACGTCGCGTGGT
GTCCGGTGCGCCCCCGGCGGCCCTTGAAAATCCGGAGGACCGAGTGCCGTCCGCGCCCGGTCGTACTCATAACCGCATCAGGTCTCCAAGGTGAACAGCC
TCTGGTCGATGGAACAATGTAGGCAAGGGAAGTCGGCAAAATGGATCCGTAACCTCGGGAAAAGGATTGGCTCTGAGGGCTGGGCACGGGGGTCCCAGTC
CCGAACCCGTCGGCTGTCGGCGGACTGCTCGAGCTGCTTCCGTGGCGAGAGCGGGTCGCCGCGTGCCGGCCGGGGGACGGACTGGGAACGGTCCCTTCGG
GGGCCTTCCCCGGGCAATTAGCAGCCGACTCAGAACTGGTACGGACAAGGGGAATCCGACTGTTTAATTAAAACAAAGCATTGCGATGGTCCCTGCGGAT
GCTCACGCAATGTGATTTCTGCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAACCAAGCGCGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGG
TAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATGAATGGATTAACGAGATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAA
CGGGCTTGGCAGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGT