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Detailed information on CNT30730495


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1KXP9|YCF15_HELAN, E-value = 4e-21

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30578031Corchorus capsularisOryza barthii17.2440.0484.83211reverse complement
CNT30111895Corchorus capsularisFicus carica6.1321.0790.6775reverse complement

Expression of CNT30730495

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MREARRSTSFKYTTWILAMQCSWAFMPIRMNH

>peptide 2 (39 aa)
MRLCTLRIGIHFLKDPGFRALVSLRDPFDDLCCVEGISI*

>peptide 3 (31 aa)
MHSSNRNPFSERSWLSCFGESPRSFRRPMLC*

>peptide 4 (38 aa)
EPYMRFSPHTAPRSILSKSLGPFPRSRISSLLPLCPEE*

>peptide 5 (51 aa)
RTVHEIFTSYGSSFNSFEVIGSFSSFENLLPSSTLSRRVTRTNSVTFSCSN*

Sequence

>CNT30730495
AGAACCGTACATGAGATTTTCACCTCATACGGCTCCTCGTTCAATTCTTTCGAAGTCATTGGGTCCTTTTCCTCGTTCGAGAATCTCCTCCCTTCTTCCA
CTCTGTCCCGAAGAGTAACTAGGACAAATTCAGTCACGTTTTCATGTTCCAATTGAACACTTTCCATTTTTGATTATTCTCAAAAGAGAAGATTTTTTTT
ACCAAACATCTGCGGATCCAATCACACGATCTTATAATAAGAACAAGAGATCTTTCTCGATCAATCCCTTTGCCCCTCATTCTTCGAGAATCAGAAAGAT
CCTTTTCAAGTTTGAATTTGTTCATTTGGAATCTGGGTTCTTCTACTTCATTTTTATTTACTTATTTATTATTTTTTTTTCCCCTCTTTTTTTTATTTCT
TTTTTTTTATTTTATTCCCTTCCTATCATTCCTTAAGTCCCATAGGTTTGATCCTATAGAATCTGACCCATTTTCTCATTGAGCGAGGGGTACGAAATAA
ATCAGATTGGTTTTTCGAATCAAAAGCACTGTGTGAAATCTTCGGTTTTTTCCTCTTTCTCTATCCCATAGGTACAGCATTTGAATCAATAGAGTAACCT
TTTCCTCTGTATCTATATGAATCGATATTATTACATTCCAATTCCTTACTGATACCCCCCAAGGAAAATCCCGAATTGGATCCCAAATTGACGGGTTAGT
GTGAGCTTATCCATGCGGTTATGCACTCTTCGAATAGGAATCCATTTTCTGAAAGATCCTGGCTTTCGTGCTTTGGTGAGTCTCCGAGATCCTTTCGACG
ACCTATGTTGTGTTGAAGGGATATCTATATGATCCGATCGATTGCGTAAAGCCCGCGGTAGCAACGGAACCGGGGAAAGTATACAGAAAAGACAGTTCTT
TTCTTTCTATTCTATTAGTATTTTCTATTCTATTTTTTCTATTCTATTAGTATTAGAATTAGTATTAGATTAGTATTCTATTCTATTAGTATTAGATTAG
TATTAGTTAGTGATCCCGGCTCAGTGAGTCCTTTCTTCCGTGATTAGCTATTGGCGCCAGTCCTAGTCCTACATTTTGTCTCTGTGGACCGAGGAGAAAG
GGGGCTCAGCGGGAAGAGGATTGTACCATGAGAGAAGCAAGGAGGTCAACCTCTTTCAAATATACAACATGGATTCTGGCAATGCAATGTAGTTGGGCTT
TCATGCCGATCCGAATGAATCATC