« Back to Corchorus capsularis search


Detailed information on CNT30730494


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678637Corchorus capsularisSetaria viridis43.6494.5894.27384reverse complement
CNT30524663Corchorus capsularisSetaria italica51.3677.6689.82452forward
CNT30641615Corchorus capsularisNymphaea colorata51.2581.4196.23451forward
CNT30549212Corchorus capsularisIpomoea triloba97.3928.4198.02857forward
CNT30702366Corchorus capsularisQuercus lobata27.9524.782.52246reverse complement
CNT30272552Corchorus capsularisChenopodium quinoa100.6870.4393.91886forward
CNT30294119Corchorus capsularisTriticum aestivum30.3497.895.88267reverse complement
CNT30220355Corchorus capsularisHordeum vulgare32.2794.9896.48284forward
CNT30396824Corchorus capsularisTriticum turgidum87.0576.0791.78766reverse complement
CNT30552690Corchorus capsularisOryza glaberrima96.3655.3992.1848forward
CNT30442196Corchorus capsularisAegilops tauschii89.8993.2893.3791reverse complement
CNT30258490Corchorus capsularisAvena sativa18.7522.8583.64165forward
CNT30657980Corchorus capsularisTriticum dicoccoides45.4598.0495.25400reverse complement
CNT303548Corchorus capsularisZea mays92.8457.3792.9817reverse complement
CNT30207763Corchorus capsularisHelianthus annuus88.0783.699.23775forward
CNT30688674Corchorus capsularisTriticum urartu95.4563.7892.98840forward
CNT30347837Corchorus capsularisEragrostis tef73.0783.490.82643reverse complement
CNT30363261Corchorus capsularisSorghum bicolor49.3234.0989.17434forward
CNT30620564Corchorus capsularisCajanus cajan86.0214.6397.75757reverse complement
CNT30354697Corchorus capsularisLactuca sativa39.5549.29100348forward
CNT30481523Corchorus capsularisChara braunii7.3927.0895.3865reverse complement
CNT30571801Corchorus capsularisVitis vinifera28.181983.06248reverse complement
CNT30642274Corchorus capsularisCannabis sativa91.798.7893.68807reverse complement
CNT3056076Corchorus capsularisAmborella trichopoda28.1810.7781.05248forward
CNT3036965Corchorus capsularisCucumis melo82.3999.5998.62725forward
CNT30331560Corchorus capsularisDioscorea rotundata36.5963.7692.24322reverse complement
CNT30150154Corchorus capsularisBrachypodium distachyon96.3674.1392.1848forward
CNT30104374Corchorus capsularisOryza rufipogon96.3663.8691.86848reverse complement
CNT30576813Corchorus capsularisOryza barthii22.3926.7396.45197forward
CNT30581628Corchorus capsularisEchinochloa crusgalli12.8433.0494.69113forward
CNT30604015Corchorus capsularisOryza punctata55.45101.0492.01488reverse complement
CNT30174498Corchorus capsularisVigna angularis45.1178.6195.72397forward
CNT30557400Corchorus capsularisPanicum hallii28.1818.0881.45248forward
CNT30551087Corchorus capsularisOryza brachyantha34.2101.0186.71301reverse complement

Expression of CNT30730494

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MTRSIQSGTRHLFSLFNSLTTRKPIVQLFD

>peptide 2 (57 aa)
GQGTVSGRQFLWGVGLPKGNGGVQRFPRAGRRLALECKGRRELDCKTHPSSRDESRP*

>peptide 3 (71 aa)
MFQGLGCSPIKAVRELGSERRETVRSISGVGVRALRGPFPSTRGPGRTHLWCTSYRAHGKRWVAKCGADNC*

Sequence

>CNT30730494
GGGCCAAGGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG
GCCCTCGAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGG
GCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATAACAGGCTGATCTTCCCCAAGAGCTCACATCGACGGGAAGGTTTGGCACCTCGATGTCGGCTCTT
CGCCACCTGGGGCTGTAGTATGTTCCAAGGGTTGGGCTGTTCGCCCATTAAAGCGGTACGTGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGTCCATA
TCCGGTGTGGGCGTTAGAGCATTGAGAGGACCTTTCCCTAGTACGAGAGGACCGGGAAGGACGCACCTCTGGTGTACCAGTTATCGTGCCCACGGTAAAC
GCTGGGTAGCCAAGTGCGGAGCGGATAACTGCTGAAAGCATCTAAGTAGTAAGCCCACCCCAAGATGAGTGCTCTCCTATTCCGACTTCCCCAGAGCCTC
CGGTAGCACAGCCGAGACGGCAAGGGGTTCTCTGTCCCTGCGGGGATCGAGCGACAGAAGTTTTGAGAATTCAAGAGAAGGTCACGGCGAGACGAGCCGT
TTATCATTACGATAGGTGTCAAGTGGAAGTGCAGTGATGTATGCAGCTGAGGCATCCTAACAGACCGGTAGACTTGAACCTTGTTCCTACATGACCCGAT
CAATTCAATCAGGCACTCGCCATCTATTTTCATTGTTCAACTCTTTGACAACACGAAAACCCATTGTTCAACTCTTTGAC