Detailed information on CNT30730489


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641655Corchorus capsularisNymphaea colorata100.443.0693.791240forward
CNT30550233Corchorus capsularisIpomoea triloba100.2443.9295.721238forward
CNT30519031Corchorus capsularisJuglans regia100.1659.595.551237forward
CNT3047206Corchorus capsularisPrunus dulcis100.0865.6795.231236forward
CNT30542906Corchorus capsularisBrassica napus99.0372.0394.61223forward

Expression of CNT30730489

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MEQCRLGKSAKWIVNLGKRIGSEGWGTGGPQSRTRRLSADCSSCFRGESGSPRAGRGTDWERSLRGPSPGN*

>peptide 2 (32 aa)
MVPADDSRNVISAQCSECQSEEIQPSAGKRRE*

>peptide 3 (29 aa)
RGPREELSFLFNGLPTLETAQPEVGSSGR*

>peptide 4 (34 aa)
MNGLTRFPLSLSTIQRNHSQGNGLGRISGERRPC*

>peptide 5 (55 aa)
MPRHLISDAHEWINEIPTVPVYYPAKPQPRERAWQNQRGKKTLLSLTLVRLCEMT*

Sequence

>CNT30730489
CGGGGGCCTCGGGAAGAGTTATCTTTTCTGTTTAACGGCCTGCCCACCCTGGAAACGGCTCAGCCGGAGGTAGGGTCCAGCGGCCGGTAGAGCACCGCAC
GTCGCGTGGTGTCCGGTGCGCCCCCGGCGGCCCTTGAAAATCCGGAGGACCGAGTGCCGTCCGCGCCCGGTCGTACTCATAACCGCATCAGGTCTCCAAG
GTGAACAGCCTCTGGTCGATGGAACAATGTAGGCTAGGGAAGTCGGCAAAATGGATCGTAAACCTCGGGAAAAGGATTGGCTCTGAGGGCTGGGGCACGG
GGGGTCCCCAGTCCCGAACCCGTCGGCTGTCGGCGGACTGCTCGAGCTGCTTCCGTGGCGAGAGCGGGTCGCCGCGTGCCGGCCGGGGGACGGACTGGGA
ACGGTCCCTTCGGGGGCCTTCCCCGGGCAATTAGCAGCCGACTCAGAACTGGTACGGACAAGGGGAATCCGACTGTTTAATTAAAACAAAGCATTGCGAT
GGTCCCTGCGGATGACTCACGCAATGTGATTTCTGCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAACCAAGCGCGGGTAAACGGCGGGAGTAACTA
TGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATGAATGGATTAACGAGATTCCCACTGTCCCTGTCTACTATCCAGCGAAAC
CACAGCCAAGGGAACGGGCTTGGCAGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGTA
TAGGTGGGAGCTTCGGCAACGGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAATCGGAAGCGGGGCTACGCCCCTCTTTTTAGACCCA
AGACCGGCATCTGTCGGTCGATCCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGGGGCGGCACATCTGTTAAAAGATAACGCAGGTGTCCTAAGA
TGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAAAAGGGTAAAAGCTCGTTTGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCCTAT
CGATCCTTTAGACCTTCGGAATTTGAAGCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTT
TTTGATCCTTCGATGTCGGCTCTTCCTATCATTGT