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Detailed information on CNT30730484


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378680Corchorus capsularisArabidopsis thaliana29.0315.5388.89189reverse complement
CNT3045662Corchorus capsularisPrunus dulcis21.9711.7490.21143forward

Expression of CNT30730484

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MNLRFQFIHRVLTREFLSKRKKIRIKSQSIQIKKQRKRNK*

>peptide 2 (47 aa)
MKWITKYSNYDSYLIFKPRVRTQKNFKEKVILFRNRKIFSSFFQTLI*

>peptide 3 (30 aa)
MDSTENGSVIFIEIVLSRRIAILVSGARNI*

Sequence

>CNT30730484
TTTGTTTCTGTATTTCCGGAATATGAGTGTGTGACTTGTTATAATTGATCCTATGGATAGTACAGAAAATGGGTCTGTCATCTTCATAGAGATAGTTTTA
TCCCGTCGGATAGCCATTCTAGTATCTGGAGCACGGAATATATGAAATGGATCACGAAGTATTCGAACTATGATTCATACTTAATATTCAAACCTCGCGT
CCGGACTCAAAAAAATTTCAAAGAAAAGGTTATATTATTTAGAAATCGAAAGATTTTTTCTTCTTTCTTTCAAACTCTCATTTAGTTTATGCTTATTTTG
ACAAACCTTTCTTTGTATTTTAATTATTATATCTATTCTATTCATTGAATAAGTGATGGTCCAATGATTCTTACTCAAAGAATCCTTGGAAGGTTTTATT
GTGAATCATCGCGGTTCTGGTATGAATCTGAGGTTTCAATTCATTCATAGGGTCTTAACAAGAGAATTCCTATCAAAAAGAAAGAAAATAAGAATAAAGT
CGCAGTCTATACAAATAAAAAAGCAAAGAAAAAGAAATAAGTAGGTAAATAGAAGATTCAAGAGGCCTGTAATGATCAACATAAAGACGAATGCGCCGAC
TTGACTTTTTTGGCATTATAATTACAACTACAAAAAATAGCTTTCGGATTT