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Detailed information on CNT30730478


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3072574Corchorus capsularisQuercus suber93.6259.9497.441173reverse complement
CNT30628180Corchorus capsularisDaucus carota95.8593.3295.841201forward
CNT3037201Corchorus capsularisCucumis melo95.5380.4496.991197reverse complement

Expression of CNT30730478

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MIRFNGLLATSRAANRPRRRDPNISPDHSIGRSDGRCVQRAGT*

>peptide 2 (32 aa)
MKYECPRLSLLIITPIPKANTIGPKSYDVIPC*

>peptide 3 (44 aa)
MKFQRLPGPVGQGYRLVEYISVARVRPRTSKGITDLLLPQTSVA*

>peptide 4 (44 aa)
MLSQLFVFHKSKNFTSDYEIRMPPTVPVNHYSDPEGQHNRTEIL*

>peptide 5 (49 aa)
MDFSRRRGQRTAHVAAIRTFHRTIQSVGATGGVYKGQGRSQRELMTRAY*

>peptide 6 (50 aa)
MMLSHANVYKRRPCFEHSNFFKVTAPEERPGQLRPGAHRRQKRRVDRCTP*

Sequence

>CNT30730478
CCGAGTGTTGTGTTACTAGTTCGCGGGTCGCTCTGCTAGGCAGGTTTCGACAATGATCCTTCCGCAGGTTCACCTACGGAAACCTTGTTACGACTTCTCC
TTCCTCTAAATGATAAGGTTCAATGGACTTCTCGCGACGTCGCGGGCAGCGAACCGCCCACGTCGCCGCGATCCGAACATTTCACCGGACCATTCAATCG
GTAGGAGCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGAATTCCTCGTTGAAGACCAACAATTGC
AATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCC
CAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAGCGGCCATAGTCCCTCTAAGAAGCTAGCCACGGAGGATCACCTCC
GCGTAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAAT
CAAGAAAGAGCTCTCAGTCTGTCAATCCTTACTATGTCTGGACCTGGTAAGTTTCCCCGTGTTGAGTCAAATTAAGCCGCAGGCTCCACTCCTGGTGGTG
CCCTTCCGTCAATTCCTTTAAGTTTCAGCCTTGCGACCATACTCCCCCCGGAACCCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAG
CAACATCCGCCGATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGAGCCCCCAACTTTCGTTCTTGATTAATGAAAAC
ATCCTTGGCAAATGCTTTCGCAGTTGTTCGTCTTTCATAAATCCAAGAATTTCACCTCTGACTATGAAATACGAATGCCCCCGACTGTCCCTGTTAATCA
TTACTCCGATCCCGAAGGCCAACACAATAGGACCGAAATCCTATGATGTTATCCCATGCTAATGTATACAAGCGTAGGCCCTGCTTTGAGCACTCTAATT
TCTTCAAAGTAACAGCGCCGGAGGAACGACCCGGCCAATTAAGGCCAGGAGCGCATCGCCGGCAGAAGAGAAGAGTAGACCGGTGCACACCGTAAAGCGG
ACCGGCCGGCCCCTCCCAAGGTCCAACTACGAGCTTTTTAACTGCAACAACTT