Detailed information on CNT30730472


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004400, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30519123Corchorus capsularisJuglans regia94.8364.8595.53917reverse complement
CNT3091928Corchorus capsularisSolanum tuberosum79.7399.8795.2771forward

Expression of CNT30730472

Peptides detected in this lncRNA

>peptide 1 (97 aa)
WEGLGGGRDESKRQRAESQWIVAARPLCHLQYPVAYLSRLQRILPAARWELRFKEACTAHPPHGLLLRHVPLGAKGPYCGSAIGRRAHASLLARILT*

>peptide 2 (75 aa)
MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTGNQNQTSFLPFCSTRDFCSR*

>peptide 3 (30 aa)
MCRPSQTPHLTMSSARIDRQMPVLGLKRGA*

>peptide 4 (36 aa)
GRDLEGGGTNRSDKGLNLSGSWQQGHSATYNTPSRI*

Sequence

>CNT30730472
TGGGAGGGACTTGGAGGGGGGAGGGACGAATCGAAGCGACAAAGGGCTGAATCTCAGTGGATCGTGGCAGCAAGGCCACTCTGCCACTTACAATACCCCG
TCGCGTATTTAAGTCGTCTGCAAAGGATTCTACCCGCCGCTCGGTGGGAATTACGCTTCAAGGAGGCCTGCACGGCTCATCCGCCGCACGGACTACTCCT
ACGACACGTGCCCTTGGGGGCCAAAGGCCCCTACTGCGGGTCGGCAATCGGGCGGCGGGCGCATGCGTCGCTTCTAGCCCGGATTCTGACTTAGAGGCGT
TCAGTCATAATCCAGCGCACGGTAGCTTCGCGCCACTGGCTTTTCAACCAAGCGCGATGACCAATTGTGCGAATCAACGGTTCCTCTCGTACTAGGTTGA
ATTACTATTGCGACGCGGCCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACA
CTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT
GTGGTAACTTTTCTGACACCTCTAGCTTCAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTCGTACTGGAAATCAGAATCA
AACGAGCTTTTTACCCTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATCTTTTAACAGATGTGCCGCCCCAGCC
AAACTCCCCACCTGACAATGTCTTCCGCCCGGATCGACCGACAGATGCCGGTCTTGGGTCTAAAAAGAGGGGCGTAGCCCCGCTTCCGATTCACGGAATA
AGTAAAATAACGTTAAAAGTAGTGGTATTTCACCGTTGCCGAAGCTCCCACTTATACTACACCTCTC