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Detailed information on CNT30730459


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30698389Corchorus capsularisQuercus lobata79.4864.0194.05941reverse complement
CNT30375710Corchorus capsularisArabidopsis thaliana98.5647.5294.61167reverse complement
CNT30500372Corchorus capsularisCoffea canephora74.5882.691.39883forward
CNT30639035Corchorus capsularisCapsicum annuum92.3188.2994.241093forward
CNT30217899Corchorus capsularisKalanchoe fedtschenkoi92.5748.4788.231096forward
CNT30336076Corchorus capsularisCynara cardunculus97.6441.1591.261156forward

Expression of CNT30730459

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MQPQSGGKFRPRLNTGERPIANKYREGKMKRTLKRESKSA*

>peptide 2 (33 aa)
YVDARNATPGQAGLPAEFKHINKRRKRNLQGFP*

>peptide 3 (70 aa)
MRIVAAAQARALDTPVETSSPRSWPAARAVSACLGTCVLPASACGLPIRPVLKHGPRSLTCVRVNGLENP*

>peptide 4 (44 aa)
MSTLAMRPQVRRDYPLSLSISISGGKETYKDSLSNGERTGKSPA*

>peptide 5 (77 aa)
MGAGDAPRSDVERREPVRRSTRGVNRCGLWRRPKPGLLIRLWRRRRLDRGQQHAPSRRASAPACSRHRPVGSPFGPS*

>peptide 6 (32 aa)
MCASQRARKPVRRKEADWWDPSRVHRRPTLIF*

Sequence

>CNT30730459
TATGTCGACGCTCGCAATGCGACCCCAGGTCAGGCGGGATTACCCGCTGAGTTTAAGCATATCAATAAGCGGAGGAAAAGAAACTTACAAGGATTCCCTT
AGTAACGGCGAGCGAACCGGGAAGAGCCCAGCTTGAGAATCGGTCGCCCTCGGCGTCCGAATTGTAGTCTGGAGAAGCGTCCTCAGCGGCGGACCGGGCC
CAAGTTCCCTGGAAAGGGGCGCCGGAGAGGGTGAGAGCCCCGTCGTGCCCGGACCCTGTCGCACCACGAGGCGCTGTCTACGAGTCGGGTTGTTTGGGAA
TGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGCTAAATACGGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAA
AAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCGGATGGGGGCCGGCGATGCGCCTCGGTCGGATGTGGAACGGCGAGAGCCGGTCCGCCGAT
CGACTCGGGGCGTGAACCGATGCGGATTGTGGCGGCGGCCCAAGCCCGGGCTCTTGATACGCCTGTGGAGACGTCGTCGCCTCGATCGTGGCCAGCAGCA
CGCGCCGTCTCGGCGTGCCTCGGCACCTGCGTGCTCCCGGCATCGGCCTGTGGGCTCCCCATTCGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACAT
GTGTGCGAGTCAACGGGCTAGAAAACCCGTAAGGCGTAAGGAAGCTGATTGGTGGGATCCCTCACGGGTGCACCGCCGACCGACCTTGATCTTCTGAGAA
GGGTTCGAGTGAGAGCATGCCTGTCGGGACCCGAAAGATGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGATA
CTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCGTCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGG
AGCCCTTAGCGAGTTCTATCGGGTAAAGCCAATGATTAGAGGCATCGGGGGCGCAACGCCCTCGACCTATTCTCAAACTTTAAATAGGTAGGACGGCGCG
GCTGCTTTGTTGAGCCGTGCCAAGGAATCGAGAGCTCCAAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACC