« Back to Corchorus capsularis search


Detailed information on CNT30730441


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30519077Corchorus capsularisJuglans regia100.2175.5197.081403reverse complement
CNT30283199Corchorus capsularisChenopodium quinoa100.2151.5696.651403forward
CNT30194621Corchorus capsularisPisum sativum100.2950.2795.371404forward
CNT30383013Corchorus capsularisTriticum turgidum99.6452.5691.681395forward
CNT30445720Corchorus capsularisSaccharum spontaneum99.6465.5993.761395reverse complement
CNT30433917Corchorus capsularisPapaver somniferum100.2151.4795.011403forward
CNT30583181Corchorus capsularisEchinochloa crusgalli100.2959.993.161404forward

Expression of CNT30730441

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLSADCSSCFRGESGSPRAGRGTDWERSLRGPSPGN*

>peptide 2 (40 aa)
MNRKPGYGAQLRANLEPTKGVGRLRQQDGGHGSRNPLRSV*

Sequence

>CNT30730441
CACCGCCGACCGACCTTGATCTTCTGAGAAGGGTTCGAGTGAGAGCATGCCTGTCGGGACCCGAAAGATGGTGAACTATGCCTGAGCGGGGCGAAGCCAG
AGGAAACTCTGGTGGAGGCCCGCAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCGTCTAGTAGCTGGT
TCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCCCTTAGCGAGTTCTATCGGGTAAAGCCAATGATTAGAGGCATCGGGGGCGCAACGCCCTCGACCTAT
TCTCAAACTTTAAATAGGTAGGACGGCGCGGCTGCTTTGTTGAGCCGTGCCAAGGAATCGAGAGCTCCAAGTGGGCCATTTTTGGTAAGCAGAACTGGCG
ATGCGGGATGAACCGGAAGCCGGGTTACGGTGCCCAACTGCGCGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCAT
GGAAGTCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACCAGCCCCGAAAATGGATGGCGCTTAAGCGCGCGACCTATACCCGGCCGT
CGGGGCAAGAGCCAGGCCTCGATGAGTAGGAGGGCGCGGCGGTCGCCGTAAAACCCGGGGCGTGAGCCCGGGCGGAGCGGCCGTCGGTGCAGATCTTGGT
GGTAGTAGCAAATATTCAAATGAGAACTTTGAAGGCCGAAGAGGGGAAAGGTTCCATGTGAACGGCACTTGCACATGGGTTAGTCGATCCTAAGAGACGG
GGGAAGCCCGTCCGATAGCGCGCAAGCGCGAGCTTCGAAAGGGAATCGGGTTAAAATTCCTGAACCGGGACGCGGCGGCTGACGGCAACGTTAGGGAGTC
CGGAGACGTCGGCGGGGGCCTCGGGAAGAGTTATCTTTTCTGTTTAACGGCCTGCCCACCCTGGAAACGGCTCAGCCGGAGGTAGGGTCCAGCGGCCGGA
AGAGCACCGCACGTCGCGTGGTGTCCGGTGCGCCCCGGCGGCCCTTGAAAATCCGGAGGACCGAGTGCCGTCCGCGCCCGGTCGTACTCATAACCGCATC
AGGTCTCCAAGGTGAACAGCCTCTGGTCGATGGAACAATGTAGGCAAGGGAAGTCGGCAAAATGGATCCGTAACCTCGGGAAAAGGATTGGCTCTGAGGG
CTGGGCACGGGGGTCCCAGTCCCGAACCCGTCGGCTGTCGGCGGACTGCTCGAGCTGCTTCCGTGGCGAGAGCGGGTCGCCGCGTGCCGGCCGGGGGACG
GACTGGGAACGGTCCCTTCGGGGGCCTTCCCCGGGCAATTAGCAGCCGACTCAGAACTGGTACGGACAAGGGGAATCCGACTGTTTAATTAAAACAAAGC