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Detailed information on CNT30730436


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30318007Corchorus capsularisCorylus avellana100.4340.4695.91414reverse complement
CNT30374695Corchorus capsularisArabidopsis thaliana86.7939.1594.931222reverse complement
CNT3021668Corchorus capsularisCitrullus lanatus100.2155.2794.91411forward
CNT3072442Corchorus capsularisQuercus suber100.581.5192.791415forward
CNT30381259Corchorus capsularisManihot esculenta100.1477.8191.131410forward
CNT3047192Corchorus capsularisPrunus dulcis100.2141.5794.761411forward
CNT30567603Corchorus capsularisActinidia chinensis62.7166.6995.47883forward
CNT30234560Corchorus capsularisBrassica oleracea100.0773.8995.031409reverse complement
CNT30312195Corchorus capsularisCamelina sativa100.0756.595.741409reverse complement
CNT30115258Corchorus capsularisEutrema salsugineum75.21100.1993.961059reverse complement

Expression of CNT30730436

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MQPQSGGKFRPRLNTGERPIANKYREGKMKRTLKRESKSA*

>peptide 2 (40 aa)
MNRKPGYGAQLRANLEPTKGVGRLRQQDGGHGSRNPLRSV*

>peptide 3 (77 aa)
MGAGDAPRSDVERREPVRRSTRGVDRCGLWRRPKPGLLIRLWRRRRLDRGQQHAPSRRASAPACSRHRPVGSPFGPS*

>peptide 4 (33 aa)
MRLGRMWNGESRSADRLGAWTDADCGGGPSPGS*

>peptide 5 (70 aa)
MRIVAAAQARALDTPVETSSPRSWPAARAVSACLGTCVLPASACGLPIRPVLKHGPRSLTCVRVNGLENP*

>peptide 6 (48 aa)
MCASQRARKPVRRKEADWWDPSRGAPPTDLDLLRRVRVRACLSGPERW*

Sequence

>CNT30730436
AGGATTCCCTTAGTAACGGCGAGCGAACCGGGAAGAGCCCAGCTTGAGAATCGGTCGCCCTCGGCGTCCGAATTGTAGTCTGGAGAAGCGTCCTCAGCGG
CGGACCGGGCCCAAGTTCCCTGGAAAGGGGCGCCGGAGAGGGTGAGAGCCCCGTCGTGCCCGGACCCTGTCGCACCACGAGGCGCTGTCTACGAGTCGGG
TTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGCTAAATACGGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAA
AGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCGGATGGGGGCCGGCGATGCGCCTCGGTCGGATGTGGAACGGCGAGAGCC
GGTCCGCCGATCGACTCGGGGCGTGGACCGATGCGGATTGTGGCGGCGGCCCAAGCCCGGGCTCTTGATACGCCTGTGGAGACGTCGTCGCCTCGATCGT
GGCCAGCAGCACGCGCCGTCTCGGCGTGCCTCGGCACCTGCGTGCTCCCGGCATCGGCCTGTGGGCTCCCCATTCGGCCCGTCTTGAAACACGGACCAAG
GAGTCTGACATGTGTGCGAGTCAACGGGCTAGAAAACCCGTAAGGCGTAAGGAAGCTGATTGGTGGGATCCCTCACGGGGTGCACCGCCGACCGACCTTG
ATCTTCTGAGAAGGGTTCGAGTGAGAGCATGCCTGTCGGGACCCGAAAGATGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGG
CCCGCAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCGTCTAGTAGCTGGTTCCCTCCGAAGTTTCCCT
CAGGATAGCTGGAGCCCTTAGCGAGTTCTATCGGGTAAAGCCAATGATTAGAGGCATCGGGGGCGCAACGCCCTCGACCTATTCTCAAACTTTAAATAGG
TAGGACGGCGCGGCTGCTTTGTTGAGCCGTGCCAAGGAATCGAGAGCTCCAAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGGAA
GCCGGGTTACGGTGCCCAACTGCGCGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTA
AGGAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGGCGCTTAAGCGCGCGACCTATACCCGGCCGTCGGGGCAAGAGCCAGGCC
TCGATGAGTAGGAGGGCGCGGCGGTCGCCGTAAAACCCGGGGCGTGAGCCCGGGCGGAGCGGCCGTCGGTGCAGATCTTGGTGGTAGTAGCAAATATTCA
AATGAGAA