Detailed information on CNT30730430


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30272397Corchorus capsularisChenopodium quinoa32.486.8786.61127reverse complement
CNT30173126Corchorus capsularisTrifolium pratense25.837.1688.12101reverse complement

Expression of CNT30730430

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MHSSNRNPFSERSWLSCFGESPRSFRRPMLC*

>peptide 2 (37 aa)
FIWNLGSSTSFLFTYLLFFFPLFFLFLFFILFPSIIP*

>peptide 3 (67 aa)
VHLESGFFYFIFIYLFIIFFSPLFFISFFYFIPFHHSLSPIGTAFESIENLFLCIYMNRYYYIPIPY*

>peptide 4 (39 aa)
MRLCTLRIGIHFLKDPGFRALVSLRDPFDDLCCVEGISI*

>peptide 5 (44 aa)
SFGIWVLLLHFYLLIYYFFFPSFFYFFFLFYSLPSFLKSHRYSI*

Sequence

>CNT30730430
GTTCATTTGGAATCTGGGTTCTTCTACTTCATTTTTATTTACTTATTTATTATTTTTTTTTCCCCTCTTTTTTTTATTTCTTTTTTTTATTTTATTCCCT
TCCATCATTCCTTAAGTCCCATAGGTACAGCATTTGAATCAATAGAGAACCTTTTCCTCTGTATCTATATGAATCGATATTATTACATTCCAATTCCTTA
CTGATACCCCCCAAGGAAAATCCCGAATTGGATCCCAAATTGACGGGTTAGTGTGAGCTTATCCATGCGGTTATGCACTCTTCGAATAGGAATCCATTTT
CTGAAAGATCCTGGCTTTCGTGCTTTGGTGAGTCTCCGAGATCCTTTCGACGACCTATGTTGTGTTGAAGGGATATCTATATGATCCGATC