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Detailed information on CNT30730415


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30628164Corchorus capsularisDaucus carota100.8248.6997.22612forward
CNT30705838Corchorus capsularisPrunus avium100.8237.0296.73612forward

Expression of CNT30730415

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MKYECPRLSLLIITPIPKANTIGPKSYDVIPC*

>peptide 2 (35 aa)
MSGPGSTPGGALPSIPLSFSLATILPPEPKDFDFS*

>peptide 3 (44 aa)
MLSQLFVFHKSKNFTSDYEIRMPPTVPVNHYSDPEGQHNRTEIL*

>peptide 4 (74 aa)
LVSRLRSRSLTELTRQIAPPTKNGHAPPPIESRKSSQSVNPYYVWTWLHSWWCPSVNSFKFQPCDHTPPGTQRL*

Sequence

>CNT30730415
CTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA
AGAGCTCTCAGTCTGTCAATCCTTACTATGTCTGGACCTGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCCTTGCGACCATAC
TCCCCCCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCCGATCCCTAGTCGGCATCGTTTATGGTTGAGAC
TAGGACGGTATCTGATCGTCTTCGAGCCCCCAACTTTCGTTCTTGATTAATGAAAACATCCTTGGCAAATGCTTTCGCAGTTGTTCGTCTTTCATAAATC
CAAGAATTTCACCTCTGACTATGAAATACGAATGCCCCCGACTGTCCCTGTTAATCATTACTCCGATCCCGAAGGCCAACACAATAGGACCGAAATCCTA
TGATGTTATCCCATGCTAATGTATACAAGCGTAGGCCTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAGCGCCGGAGGAACGACCCGGCCAATTAAGG
CCAGGAG