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Detailed information on CNT30730412


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691356Corchorus capsularisOryza sativa92.1285.9795.921005forward
CNT30619375Corchorus capsularisSesamum indicum98.966.1696.571079forward
CNT30585697Corchorus capsularisMusa acuminata87.4493.7196.44954forward
CNT30681720Corchorus capsularisTriticum urartu100.1887.0995.151093forward

Expression of CNT30730412

Peptides detected in this lncRNA

>peptide 1 (33 aa)
QGYRLVEYISVARVRPRTSKGITDLLLPQTSVA*

>peptide 2 (32 aa)
MKYECPRLSLLIITPIPKANTIGPKSYDVIPC*

>peptide 3 (44 aa)
MLSQLFVFHKSKNFTSDYEIRMPPTVPVNHYSDPEGQHNRTEIL*

Sequence

>CNT30730412
CCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCC
TAAGCGGCCATAGTCCCTCTAAGAAGCTAGCCACGGAGGATCACCTCCGCGTAGCTAGTTAGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCT
TTAAGTTTCAGCCTTGCGACCATACTACCCCCCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCCGATCCC
TAGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGAGCCCCCAACTTTCGTTCTTGATTAATGAAAACATCCTTGGCAAATGCTT
TCGCAGTTGTTCGTCTTTCATAAATCCAAGAATTTCACCTCTGACTATGAAATACGAATGCCCCCGACTGTCCCTGTTAATCATTACTCCGATCCCGAAG
GCCAACACAATAGGACCGAAATCCTATGATGTTATCCCATGCTAATGTATACAAGCGTAGGCCTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAGCGC
CGGAGGAACGACCCGGCCAATTAAGGCCAGGAGCGCATCGCCGGCAGAAGAGAAGAGTAGACCGGTGCACACCGTAAAGCGGACCGGCCGACCCCTCCCA
AGGTCCAACTACGAGCTTTTTAACTGCAACAACTTAAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAATGGATC
CTCGTTAAGGGATTTAGATTGTACTCATTCCAATTACCAGACTCGAAGAGCCCGGTATTGTTATTTATTGTCACTACCTCCCCGTGTCAGGATTGGGTAA
TTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATAGTAG
GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCACAAAGGCCGTGCGATCCGTCGAGTTATCATGA