Detailed information on CNT30730407


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30519100Corchorus capsularisJuglans regia99.4792.3496.28940forward
CNT30147369Corchorus capsularisMedicago truncatula82.86100.1397.06783forward
CNT30368933Corchorus capsularisSorghum bicolor98.273.5396.55928forward
CNT30705843Corchorus capsularisPrunus avium96.8358.896.07915forward
CNT30117075Corchorus capsularisOryza nivara89.3168.4596.56844forward

Expression of CNT30730407

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MKFQRLPGPVGQGYRLVEYISVARVRPRTSKASQTCYCLKLPWPKRP*

>peptide 2 (44 aa)
MLSQLFVFHKSKNFTSDHEIRMPPTVPVNHYSDPEGQHNRTEIL*

>peptide 3 (43 aa)
MIRFNGLLATSRAANRPRRRDPNISPDHSIGRSDGRCVQRAGT*

>peptide 4 (32 aa)
MKYECPRLSLLIITPIPKANTIGPKSYDVIPC*

>peptide 5 (49 aa)
MDFSRRRGQRTAHVAAIRTFHRTIQSVGATGGVYKGQGRSQRELMTRAY*

>peptide 6 (41 aa)
ETLLRLLLPLNDKVQWTSRDVAGSEPPTSPRSEHFTGPFNR*

Sequence

>CNT30730407
CGGAAACCTTGTTACGACTTCTCCTTCCTCTAAATGATAAGGTTCAATGGACTTCTCGCGACGTCGCGGGCAGCGAACCGCCCACGTCGCCGCGATCCGA
ACATTTCACCGGACCATTCAATCGGTAGGAGCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGAAT
TCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATA
CATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAGCGGCCATAGTCCCTCTAAGAA
GCTAGCCACGGAGGAATCACCTCCGCGTAGCTAGTTAGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCCTTGCGACCATA
CTCCCCCCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCCGATCCCTAGTCGGCATCGTTTATGGTTGAGA
CTAGGACGGTATCTGATCGTCTTCGAGCCCCCAACTTTCGTTCTTGATTAATGAAAACATCCTTGGCAAATGCTTTCGCAGTTGTTCGTCTTTCATAAAT
CCAAGAATTTCACCTCTGACCATGAAATACGAATGCCCCCGACTGTCCCTGTTAATCATTACTCCGATCCCGAAGGCCAACACAATAGGACCGAAATCCT
ATGATGTTATCCCATGCTAATGTATACAAGCGTAGGCCTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAGCGCCGGAGGAACGACCCGGCCAATTAAG
GCCAGGAGCGCATCGCCGGCAGAAGAGAAGAGTAGACCGGTGCAC